Rh6DG212200

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000669
Physical Location & Seq
Reverse (-)
37794968 .. 37795964
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG212200.1

Sequence Viewer

Length: 723 bp
ATGGAAGCTTCAGGTGTTGATCAGCGAGACAAGTATCGCTCTTACATGTATGGAGATGGAGAGAAGAACACACAATGGAGATCTGGTGCCCCTCCTAACTACGATGTTGTTAACAAGCTCTTTGAAGAAGGCAGAACCAAGATATGGCCAACTGGGTCACTGGAAGAAAGAGTTCAGAACCTTTTGAAGACATACGAGATGGAGATTTCCCACAAAGCAAACCCTCAGGACTTCAAATCTATTGATCCAGAAAAGTTCACTTTCGTCCAGAATGGGAAAGAACCACTGACTATTGAAGATATTACGAAAATGGGTGGAGTCTATAATGTAGATCTGCAAAGCTCTCTACCTGAGGAGTTTCAGATCTACAAACCAGCAGAGGAAACAGCAGAATCGTCTCATAAGCTTTTCACCACTACTTTTCCACGTGGATTTGCAATCGAGGTCCTTGAGGTCTATTCCGGTCCGCCGGTGATAGCCTACAAGTTCAGGCACTGGTCTTACATGGAAGGTCCTTTCAAAGGGTATGCCCCTACTGGAGAATTGGTTCAATTCTTTGGCATTGCAATTTTCAGGGTGGATGAGCAGATGAGAATTGTAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTCTTGGAGGGCTGACGAAGGGTGCCAAAATTGAAAACTGTGGTGGGAATGGTGCAAAAAAAAGTAGCTGCCCTATCCTTAGGAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.3

Weight (kDa)

5.59

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 653
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 467
AclWI GGATC 2 cut(s) 239, 614
AcoI YGGCCR 1 cut(s) 146
AcvI CACGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 144, 521
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 7 cut(s) 125, 187, 235, 296, 520, 551, 665
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
AluBI AGCT 5 cut(s) 8, 118, 342, 406, 699
AluI AGCT 5 cut(s) 8, 118, 342, 406, 699
Alw26I GTCTC 2 cut(s) 21, 402
AlwI GGATC 2 cut(s) 239, 614
AlwNI CAGNNNCTG 1 cut(s) 495
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 699
Asp700I GAANNNNTTC 2 cut(s) 171, 546
AspS9I GGNCC 3 cut(s) 445, 464, 512
AsuHPI GGTGA 2 cut(s) 403, 484
AvaII GGWCC 3 cut(s) 445, 464, 512
AxyI CCTNAGG 3 cut(s) 225, 351, 710
BaeGI GKGCMC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 148
BanI GGYRCC 2 cut(s) 86, 653
BbrPI CACGTG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 686
BccI CCATC 2 cut(s) 50, 193
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 21, 402
BfmI CTRYAG 1 cut(s) 624
BglII AGATCT 3 cut(s) 80, 331, 363
BisI GCNGC 1 cut(s) 700
BlsI GCNGC 1 cut(s) 701
Bme18I GGWCC 3 cut(s) 445, 464, 512
BmgT120I GGNCC 3 cut(s) 445, 464, 512
BmiI GGNNCC 2 cut(s) 88, 655
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 470
BsaAI YACGTR 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 531, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 521
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 4 cut(s) 157, 165, 500, 541
Bse21I CCTNAGG 3 cut(s) 225, 351, 710
Bse3DI GCAATG 1 cut(s) 561
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 2 cut(s) 144, 521
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 2 cut(s) 239, 342
BseNI ACTGG 4 cut(s) 157, 165, 500, 541
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 1 cut(s) 686
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 2 cut(s) 86, 653
BsiSI CCGG 2 cut(s) 462, 470
BslI CCNNNNNNNGG 2 cut(s) 144, 521
BsmAI GTCTC 2 cut(s) 21, 402
BsmBI CGTCTC 1 cut(s) 402
BsnI GGCC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 6 cut(s) 19, 80, 244, 331, 363, 619
BspACI CCGC 1 cut(s) 467
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 238, 343
BspLI GGNNCC 2 cut(s) 88, 655
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 2 cut(s) 239, 614
BspT107I GGYRCC 2 cut(s) 86, 653
BsrDI GCAATG 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 4 cut(s) 157, 165, 500, 541
BssAI RCCGGY 1 cut(s) 469
BssMI GATC 6 cut(s) 19, 80, 244, 331, 363, 619
Bst4CI ACNGT 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 225, 351, 710
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 6 cut(s) 22, 83, 247, 334, 366, 622
BstMAI GTCTC 2 cut(s) 21, 402
BstMBI GATC 6 cut(s) 19, 80, 244, 331, 363, 619
BstNSI RCATGY 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 686
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 3 cut(s) 80, 331, 363
BstYI RGATCY 3 cut(s) 80, 331, 363
Bsu36I CCTNAGG 3 cut(s) 225, 351, 710
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 3 cut(s) 158, 284, 493
CaiI CAGNNNCTG 1 cut(s) 495
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 445, 464, 512
CpoI CGGWCCG 1 cut(s) 464
CspI CGGWCCG 1 cut(s) 464
CviAII CATG 2 cut(s) 46, 505
CviJI RGCY 8 cut(s) 8, 118, 148, 342, 406, 479, 643, 699
CviKI_1 RGCY 8 cut(s) 8, 118, 148, 342, 406, 479, 643, 699
DdeI CTNAG 3 cut(s) 225, 351, 710
DpnI GATC 6 cut(s) 21, 82, 246, 333, 365, 621
DpnII GATC 6 cut(s) 19, 80, 244, 331, 363, 619
EaeI YGGCCR 1 cut(s) 146
EciI GGCGGA 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 445, 464, 512
Eco72I CACGTG 1 cut(s) 428
Eco81I CCTNAGG 3 cut(s) 225, 351, 710
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoO109I RGGNCCY 2 cut(s) 445, 512
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 2 cut(s) 49, 508
FaiI YATR 8 cut(s) 47, 51, 145, 193, 324, 402, 506, 528
FatI CATG 2 cut(s) 45, 504
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 700
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 1 cut(s) 700
GluI GCNGC 1 cut(s) 700
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 1 cut(s) 148
HapII CCGG 2 cut(s) 462, 470
Hin1II CATG 2 cut(s) 49, 508
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 6, 404
HinfI GANTC 2 cut(s) 318, 392
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 2 cut(s) 462, 470
HphI GGTGA 2 cut(s) 403, 484
Hpy166II GTNNAC 2 cut(s) 112, 258
Hpy188I TCNGA 2 cut(s) 177, 363
Hpy188III TCNNGA 3 cut(s) 227, 248, 268
Hpy8I GTNNAC 2 cut(s) 112, 258
HpyAV CCTTC 3 cut(s) 122, 503, 643
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 337, 437, 566, 626, 686
HpyF3I CTNAG 3 cut(s) 225, 351, 710
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 2 cut(s) 49, 508
Ksp22I TGATCA 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 6 cut(s) 19, 80, 244, 331, 363, 619
Lsp1109I GCAGC 1 cut(s) 686
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 156
MalI GATC 6 cut(s) 21, 82, 246, 333, 365, 621
MboI GATC 6 cut(s) 19, 80, 244, 331, 363, 619
MboII GAAGA 5 cut(s) 76, 137, 176, 199, 308
MflI RGATCY 3 cut(s) 80, 331, 363
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 5 cut(s) 542, 551, 567, 594, 660
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 7 cut(s) 102, 234, 346, 373, 436, 445, 632
Mox20I TGGCCA 1 cut(s) 148
MroXI GAANNNNTTC 2 cut(s) 171, 546
MscI TGGCCA 1 cut(s) 148
MseI TTAA 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 148
MspI CCGG 2 cut(s) 462, 470
NdeII GATC 6 cut(s) 19, 80, 244, 331, 363, 619
NlaIII CATG 2 cut(s) 49, 508
NlaIV GGNNCC 2 cut(s) 88, 655
NmuCI GTSAC 1 cut(s) 156
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 171, 546
PfeI GAWTC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 701
PleI GAGTC 1 cut(s) 326
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 1 cut(s) 326
Ppu21I YACGTR 1 cut(s) 428
PpuMI RGGWCCY 2 cut(s) 445, 512
PscI ACATGT 1 cut(s) 45
Psp5II RGGWCCY 2 cut(s) 445, 512
PspCI CACGTG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 88, 655
PspPI GGNCC 3 cut(s) 445, 464, 512
PspPPI RGGWCCY 2 cut(s) 445, 512
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 3 cut(s) 80, 331, 363
Rsr2I CGGWCCG 1 cut(s) 464
RsrII CGGWCCG 1 cut(s) 464
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 700
Sau3AI GATC 6 cut(s) 19, 80, 244, 331, 363, 619
Sau96I GGNCC 3 cut(s) 445, 464, 512
SchI GAGTC 1 cut(s) 327
SduI GDGCHC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 624
SgrAI CRCCGGYG 1 cut(s) 469
SinI GGWCC 3 cut(s) 445, 464, 512
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 5 cut(s) 542, 551, 567, 594, 660
SsiI CCGC 1 cut(s) 467
TaaI ACNGT 1 cut(s) 671
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 441
TasI AATT 5 cut(s) 542, 551, 567, 594, 660
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 3 cut(s) 165, 291, 500
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 1 cut(s) 699
Tsp45I GTSAC 1 cut(s) 156
TspRI CASTG 3 cut(s) 165, 291, 500
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 3 cut(s) 445, 464, 512
XagI CCTNNNNNAGG 1 cut(s) 519
XceI RCATGY 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 171, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.