Rroxscaffold_7G00191840

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000669
Physical Location & Seq
Forward (+)
32671990 .. 32674073
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191840.1

Sequence Viewer

Length: 714 bp
ATGACCGGAGCAAGGGACGACGGGGAACCTCACCGGCGAGAGAAGGTGCGTCTAGAGCAGCCGGTACCACTTCCGGAGGTGGCCGGAAGGCGGAGAAAGAAAAAAAAACCAGAAGAAGAGAAAGTGTCGATATGGCCACCTGGGTCACTGGAAGAAATGGTACAGAACCTTTTGAAAACTTACGAAATGGAGATCTTCCACAAAGCAAACCCCGAGGACTTCAAATCAATTGATCCAAAAAAGTACACTCTCAGCCTGAATGGTAGGGAAGCATTGAGTTTGGAAGGTATTAAGAAACTGGGTGGAGGCTATAATCCGCTGCTGCAAAGCTCTATGCCTGAGGAGTTTCAGATCTACAAACCTGCTGAGGAAACAGCAGAGTCATCCCATAAGGTTTTCACCACTACTTTCCCACGTGGATTTGCGATAGAAGTCGTTGAAGTCTATTCCGGTCCACCGTTGATAGCCTACAAGTTCAGGCACTGGGCTTACATGGAAGGTCCGTTCAAAGGGCATGCCCCTACTGGAGAGTTGGTTCAATTCTATGGCATCGCTATTTTTGGGGTGGATGAGCAGATGAGAGTCACGAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTCTCGGAGGACTAATGAAGGGTACCAAAATTGAAAATTACGATGGAGATGCTGCAACGACAAGTAGTTGCCCTGTCCTCAGGAACACGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.75

Weight (kDa)

6.04

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
Acc65I GGTACC 2 cut(s) 64, 641
AccB1I GGYRCC 2 cut(s) 64, 641
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 2 cut(s) 91, 317
AclWI GGATC 2 cut(s) 227, 602
AcoI YGGCCR 2 cut(s) 81, 134
AcvI CACGTG 1 cut(s) 416
AfaI GTAC 4 cut(s) 66, 162, 245, 643
AfiI CCNNNNNNNGG 3 cut(s) 12, 90, 509
AgsI TTSAA 6 cut(s) 175, 223, 440, 508, 539, 653
AjnI CCWGG 1 cut(s) 139
AleI CACNNNNGTG 1 cut(s) 590
AloI GAACNNNNNNTCC 4 cut(s) 488, 519, 520, 551
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
AlwI GGATC 2 cut(s) 227, 602
AlwNI CAGNNNCTG 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 81, 134
ApeKI GCWGC 4 cut(s) 58, 319, 322, 671
Asp718I GGTACC 2 cut(s) 64, 641
AspS9I GGNCC 2 cut(s) 452, 500
AsuHPI GGTGA 2 cut(s) 23, 391
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 452, 500
AxyI CCTNAGG 2 cut(s) 339, 698
BalI TGGCCA 1 cut(s) 136
BanI GGYRCC 2 cut(s) 64, 641
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbrPI CACGTG 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 4 cut(s) 70, 306, 309, 658
BccI CCATC 1 cut(s) 656
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 1 cut(s) 141
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 370
BglII AGATCT 2 cut(s) 192, 351
BisI GCNGC 4 cut(s) 59, 320, 323, 672
BlsI GCNGC 4 cut(s) 60, 321, 324, 673
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 2 cut(s) 452, 500
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 452, 500
BmiI GGNNCC 3 cut(s) 27, 66, 643
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 2 cut(s) 308, 493
BmsI GCATC 2 cut(s) 558, 658
BmuI ACTGGG 2 cut(s) 308, 493
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 140, 213
BsaWI WCCGGW 3 cut(s) 5, 73, 449
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 90, 509
Bse118I RCCGGY 2 cut(s) 33, 61
Bse1I ACTGG 4 cut(s) 153, 303, 488, 529
Bse21I CCTNAGG 2 cut(s) 339, 698
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 140, 213
BseGI GGATG 2 cut(s) 383, 574
BseLI CCNNNNNNNGG 3 cut(s) 12, 90, 509
BseMII CTCAG 4 cut(s) 265, 330, 357, 712
BseNI ACTGG 4 cut(s) 153, 303, 488, 529
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 4 cut(s) 70, 306, 309, 658
BshFI GGCC 2 cut(s) 83, 136
BshNI GGYRCC 2 cut(s) 64, 641
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 6 cut(s) 6, 34, 62, 74, 84, 450
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 12, 90, 509
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 83, 136
BsoBI CYCGRG 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 4 cut(s) 192, 232, 351, 607
BspACI CCGC 2 cut(s) 91, 317
BspANI GGCC 2 cut(s) 83, 136
BspCNI CTCAG 4 cut(s) 264, 331, 358, 711
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 27, 66, 643
BspMAI CTGCAG 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 227, 602
BspT107I GGYRCC 2 cut(s) 64, 641
BsrFI RCCGGY 2 cut(s) 33, 61
BsrI ACTGG 4 cut(s) 153, 303, 488, 529
BssAI RCCGGY 2 cut(s) 33, 61
BssECI CCNNGG 2 cut(s) 140, 213
BssMI GATC 4 cut(s) 192, 232, 351, 607
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 459
Bst6I CTCTTC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 4 cut(s) 251, 339, 366, 698
BstF5I GGATG 2 cut(s) 383, 574
BstKTI GATC 4 cut(s) 195, 235, 354, 610
BstMBI GATC 4 cut(s) 192, 232, 351, 607
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 4 cut(s) 70, 306, 309, 658
BstX2I RGATCY 2 cut(s) 192, 351
BstYI RGATCY 2 cut(s) 192, 351
Bsu36I CCTNAGG 2 cut(s) 339, 698
BsuRI GGCC 2 cut(s) 83, 136
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 2 cut(s) 383, 574
BtsIMutI CAGTG 2 cut(s) 146, 481
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 483
Cfr10I RCCGGY 2 cut(s) 33, 61
Cfr13I GGNCC 2 cut(s) 452, 500
CseI GACGC 1 cut(s) 38
Csp6I GTAC 4 cut(s) 65, 161, 244, 642
CviAII CATG 2 cut(s) 493, 515
CviJI RGCY 8 cut(s) 61, 83, 136, 255, 309, 330, 467, 488
CviKI_1 RGCY 8 cut(s) 61, 83, 136, 255, 309, 330, 467, 488
CviQI GTAC 4 cut(s) 65, 161, 244, 642
DdeI CTNAG 4 cut(s) 251, 339, 366, 698
DpnI GATC 4 cut(s) 194, 234, 353, 609
DpnII GATC 4 cut(s) 192, 232, 351, 607
EaeI YGGCCR 2 cut(s) 81, 134
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 452, 500
Eco72I CACGTG 1 cut(s) 416
Eco81I CCTNAGG 2 cut(s) 339, 698
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 496, 518
FaiI YATR 7 cut(s) 133, 312, 335, 390, 494, 516, 546
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 492, 514
Fnu4HI GCNGC 4 cut(s) 59, 320, 323, 672
FokI GGATG 2 cut(s) 370, 581
Fsp4HI GCNGC 4 cut(s) 59, 320, 323, 672
FspBI CTAG 1 cut(s) 53
GluI GCNGC 4 cut(s) 59, 320, 323, 672
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 2 cut(s) 83, 136
HapII CCGG 6 cut(s) 6, 34, 62, 74, 84, 450
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 496, 518
HinfI GANTC 2 cut(s) 380, 582
HpaII CCGG 6 cut(s) 6, 34, 62, 74, 84, 450
HphI GGTGA 2 cut(s) 23, 391
Hpy166II GTNNAC 2 cut(s) 246, 455
Hpy188I TCNGA 2 cut(s) 351, 626
Hpy188III TCNNGA 4 cut(s) 53, 74, 586, 700
Hpy8I GTNNAC 2 cut(s) 246, 455
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 6 cut(s) 37, 81, 278, 491, 583, 631
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 325, 614, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 4 cut(s) 251, 339, 366, 698
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 496, 518
Kpn2I TCCGGA 1 cut(s) 73
KpnI GGTACC 2 cut(s) 68, 645
Kzo9I GATC 4 cut(s) 192, 232, 351, 607
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 4 cut(s) 70, 306, 309, 658
LweI GCATC 2 cut(s) 558, 658
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 2 cut(s) 144, 583
MalI GATC 4 cut(s) 194, 234, 353, 609
MboI GATC 4 cut(s) 192, 232, 351, 607
MboII GAAGA 4 cut(s) 125, 128, 164, 187
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 2 cut(s) 192, 351
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 4 cut(s) 228, 539, 648, 655
MluNI TGGCCA 1 cut(s) 136
MlyI GAGTC 2 cut(s) 389, 591
MnlI CCTC 8 cut(s) 39, 70, 208, 299, 334, 361, 620, 707
Mox20I TGGCCA 1 cut(s) 136
MroI TCCGGA 1 cut(s) 73
MscI TGGCCA 1 cut(s) 136
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 6 cut(s) 6, 34, 62, 74, 84, 450
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 4 cut(s) 192, 232, 351, 607
NlaIII CATG 2 cut(s) 496, 518
NlaIV GGNNCC 3 cut(s) 27, 66, 643
NmuCI GTSAC 2 cut(s) 144, 583
NspI RCATGY 1 cut(s) 518
OliI CACNNNNGTG 1 cut(s) 590
PaeI GCATGC 1 cut(s) 518
PkrI GCNGC 4 cut(s) 60, 321, 324, 673
PleI GAGTC 2 cut(s) 388, 590
PmaCI CACGTG 1 cut(s) 416
PmlI CACGTG 1 cut(s) 416
PpsI GAGTC 2 cut(s) 388, 590
Ppu21I YACGTR 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 139
PspCI CACGTG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 27, 66, 643
PspPI GGNCC 2 cut(s) 452, 500
PstI CTGCAG 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 483
PsuI RGATCY 2 cut(s) 192, 351
RsaI GTAC 4 cut(s) 66, 162, 245, 643
RsaNI GTAC 4 cut(s) 65, 161, 244, 642
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 59, 320, 323, 672
Sau3AI GATC 4 cut(s) 192, 232, 351, 607
Sau96I GGNCC 2 cut(s) 452, 500
SchI GAGTC 2 cut(s) 389, 591
ScrFI CCNGG 1 cut(s) 141
SfaNI GCATC 2 cut(s) 558, 658
SfcI CTRYAG 1 cut(s) 612
SgrAI CRCCGGYG 1 cut(s) 33
SinI GGWCC 2 cut(s) 452, 500
SmiMI CAYNNNNRTG 1 cut(s) 590
SphI GCATGC 1 cut(s) 518
Sse9I AATT 4 cut(s) 228, 539, 648, 655
SsiI CCGC 2 cut(s) 91, 317
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 459
TaiI ACGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 128
TasI AATT 4 cut(s) 228, 539, 648, 655
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 153, 488
TseFI GTSAC 2 cut(s) 144, 583
TseI GCWGC 4 cut(s) 58, 319, 322, 671
Tsp45I GTSAC 2 cut(s) 144, 583
TspDTI ATGAA 1 cut(s) 650
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 2 cut(s) 153, 488
VpaK11BI GGWCC 2 cut(s) 452, 500
XbaI TCTAGA 1 cut(s) 52
XceI RCATGY 1 cut(s) 518
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.