pycom05g00960

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000669
Physical Location & Seq
Forward (+)
1133481 .. 1135166
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00960.4

Sequence Viewer

Length: 762 bp
ATGATCCTTCGATCCAGCAGTAGTCTTTGCTTCTACCCTATATTGAACATGGCATCTTCAGGTGTTGAGGGAGACAAGTACCGTTCGTATTTGACTGGAGAAGGAGAAAAGAACACCCAATGGAAGTTTGGTGCCCCTACCTATGAAGTTGTTAACAAGCTCTTTGAGGAAGGCAGAACCAAGATATGGCCGCCCGGGTCACTAGAAGAAGAGGTGCAGAACCTTGTAAAGACATGGGAGATGGAGCTTTTCCATAAGTCCAACCTTGATGATATCAAATCAATTGATCCCAACACGTACACTTTCAGTCTAAATGGAAGGAAAGGCATAAATATTGAAGAAATAGGGAAACTTGGAGGAGGATATAACCCTTTGCTTCAGACCTCACTGCCTGAGAAACTCAGGGGATATAATCCAGATGAGGAAACAGCAGAATCATCCCACAAGGCTTTCACAACAACATTCCCTCGTGGGTTTGCGTTGGAGATCCTCCAAGTTTATTCAGGGCCACCAGAGATTATCTACAAATTCAGGCACTGGGGTTATATGGAGGGCTCTTTCAAGGGCCATGCTCCCACTGGAGAAATGGTTGAAGTCTTCGGAATGGCCATTTTAACGGTGGACGAGCACAACAAAATTGTTAAGGTGGAGTTTTTCTATGATCCTGGACAACTTCTTGGAGGTCTTTTGAAGGGTGCGAAATTGGGTACTTCTTCCGAAGAGACAGCTTCAAGCTGCCCAGTCCTGAGGAGCACAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.23

Weight (kDa)

5.38

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 186
AciI CCGC 1 cut(s) 191
AclWI GGATC 4 cut(s) 6, 281, 481, 656
AcoI YGGCCR 2 cut(s) 188, 606
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 42, 362
AfaI GTAC 3 cut(s) 80, 299, 709
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 6 cut(s) 46, 338, 562, 593, 691, 732
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 4 cut(s) 160, 247, 728, 735
AluI AGCT 4 cut(s) 160, 247, 728, 735
Alw21I GWGCWC 2 cut(s) 630, 755
Alw26I GTCTC 2 cut(s) 66, 716
AlwI GGATC 4 cut(s) 6, 281, 481, 656
AlwNI CAGNNNCTG 1 cut(s) 537
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 4 cut(s) 188, 506, 565, 606
ApeKI GCWGC 1 cut(s) 735
ApoI RAATTY 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 506, 565
AsuC2I CCSGG 2 cut(s) 195, 196
AvaI CYCGRG 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 608
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 557
BauI CACGAG 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 589
Bbv12I GWGCWC 2 cut(s) 630, 755
BbvI GCAGC 1 cut(s) 722
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 666
BcnI CCSGG 2 cut(s) 195, 196
BcoDI GTCTC 2 cut(s) 66, 716
BfaI CTAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 191, 736
BlsI GCNGC 2 cut(s) 192, 737
Bme1390I CCNGG 3 cut(s) 195, 196, 666
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 506, 565
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 3 cut(s) 195, 196, 666
BmrI ACTGGG 2 cut(s) 547, 734
BmsI GCATC 1 cut(s) 62
BmuI ACTGGG 2 cut(s) 547, 734
BpiI GAAGAC 1 cut(s) 589
BpmI CTGGAG 2 cut(s) 117, 600
BpuMI CCSGG 2 cut(s) 195, 196
BsaAI YACGTR 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 4 cut(s) 100, 542, 583, 740
Bse21I CCTNAGG 1 cut(s) 746
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 384, 415, 737
BseNI ACTGG 4 cut(s) 100, 542, 583, 740
BseRI GAGGAG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 236
BshFI GGCC 4 cut(s) 190, 508, 567, 608
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 630, 755
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 66, 716
BsnI GGCC 4 cut(s) 190, 508, 567, 608
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 4 cut(s) 136, 557, 630, 755
Bsp143I GATC 5 cut(s) 3, 11, 286, 486, 661
BspACI CCGC 1 cut(s) 191
BspANI GGCC 4 cut(s) 190, 508, 567, 608
BspCNI CTCAG 3 cut(s) 385, 414, 738
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 4 cut(s) 6, 281, 481, 656
BspT107I GGYRCC 1 cut(s) 131
BsrI ACTGG 4 cut(s) 100, 542, 583, 740
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 5 cut(s) 3, 11, 286, 486, 661
BssSI CACGAG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 83, 619
Bst6I CTCTTC 2 cut(s) 204, 714
BstBAI YACGTR 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 393, 401, 746
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 5 cut(s) 6, 14, 289, 489, 664
BstMAI GTCTC 2 cut(s) 66, 716
BstMBI GATC 5 cut(s) 3, 11, 286, 486, 661
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 3 cut(s) 193, 194, 664
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 722
BstV2I GAAGAC 1 cut(s) 589
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 746
BsuRI GGCC 4 cut(s) 190, 508, 567, 608
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 3 cut(s) 386, 535, 576
CaiI CAGNNNCTG 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 506, 565
Cfr9I CCCGGG 1 cut(s) 194
Csp6I GTAC 3 cut(s) 79, 298, 708
CviAII CATG 3 cut(s) 49, 234, 569
CviQI GTAC 3 cut(s) 79, 298, 708
DdeI CTNAG 3 cut(s) 393, 401, 746
DpnI GATC 5 cut(s) 5, 13, 288, 488, 663
DpnII GATC 5 cut(s) 3, 11, 286, 486, 661
EaeI YGGCCR 2 cut(s) 188, 606
Eam1104I CTCTTC 2 cut(s) 204, 714
EarI CTCTTC 2 cut(s) 204, 714
Eco24I GRGCYC 1 cut(s) 557
Eco32I GATATC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 42, 362
Eco81I CCTNAGG 1 cut(s) 746
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 557
FaeI CATG 3 cut(s) 52, 237, 572
FatI CATG 3 cut(s) 48, 233, 568
Fnu4HI GCNGC 2 cut(s) 191, 736
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 2 cut(s) 191, 736
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 191, 736
GsuI CTGGAG 2 cut(s) 117, 600
HaeIII GGCC 4 cut(s) 190, 508, 567, 608
HapII CCGG 1 cut(s) 195
Hin1II CATG 3 cut(s) 52, 237, 572
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 434
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 3 cut(s) 154, 300, 622
Hpy188I TCNGA 3 cut(s) 381, 602, 718
Hpy188III TCNNGA 2 cut(s) 416, 745
Hpy8I GTNNAC 3 cut(s) 154, 300, 622
HpyAV CCTTC 5 cut(s) 17, 95, 164, 312, 685
HpyCH4III ACNGT 2 cut(s) 83, 619
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 217
HpyF3I CTNAG 3 cut(s) 393, 401, 746
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 3 cut(s) 52, 237, 572
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 5 cut(s) 3, 11, 286, 486, 661
LmnI GCTCC 3 cut(s) 244, 577, 750
Lsp1109I GCAGC 1 cut(s) 722
LweI GCATC 1 cut(s) 62
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 198
MalI GATC 5 cut(s) 5, 13, 288, 488, 663
MboI GATC 5 cut(s) 3, 11, 286, 486, 661
MboII GAAGA 7 cut(s) 48, 218, 221, 350, 589, 705, 731
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 4 cut(s) 136, 557, 630, 755
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 4 cut(s) 282, 527, 636, 701
MluNI TGGCCA 1 cut(s) 608
MmeI TCCRAC 2 cut(s) 285, 462
Mox20I TGGCCA 1 cut(s) 608
MscI TGGCCA 1 cut(s) 608
MseI TTAA 3 cut(s) 153, 614, 642
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 3 cut(s) 195, 196, 666
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 666
NciI CCSGG 2 cut(s) 195, 196
NdeII GATC 5 cut(s) 3, 11, 286, 486, 661
NlaIII CATG 3 cut(s) 52, 237, 572
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 2 cut(s) 192, 737
Ppu21I YACGTR 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 506, 565
PstNI CAGNNNCTG 1 cut(s) 537
PsuI RGATCY 1 cut(s) 486
RsaI GTAC 3 cut(s) 80, 299, 709
RsaNI GTAC 3 cut(s) 79, 298, 708
SaqAI TTAA 3 cut(s) 153, 614, 642
SatI GCNGC 2 cut(s) 191, 736
Sau3AI GATC 5 cut(s) 3, 11, 286, 486, 661
Sau96I GGNCC 2 cut(s) 506, 565
ScrFI CCNGG 3 cut(s) 195, 196, 666
SduI GDGCHC 4 cut(s) 136, 557, 630, 755
SfaNI GCATC 1 cut(s) 62
SmaI CCCGGG 1 cut(s) 196
Sse9I AATT 4 cut(s) 282, 527, 636, 701
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 334
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 3 cut(s) 193, 194, 664
TaaI ACNGT 2 cut(s) 83, 619
TaiI ACGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 10
TasI AATT 4 cut(s) 282, 527, 636, 701
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 3 cut(s) 153, 614, 642
Tru9I TTAA 3 cut(s) 153, 614, 642
TscAI CASTG 3 cut(s) 393, 542, 583
TseFI GTSAC 1 cut(s) 198
TseI GCWGC 1 cut(s) 735
Tsp45I GTSAC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 159
TspMI CCCGGG 1 cut(s) 194
TspRI CASTG 3 cut(s) 393, 542, 583
Van91I CCANNNNNTGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 4 cut(s) 125, 575, 583, 616
XmaI CCCGGG 1 cut(s) 194
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.