Rmu_sc0004481.1_g000001

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004481.1
OG0000669
Physical Location & Seq
Forward (+)
15459 .. 17672
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004481.1_g000001.1.cds

Sequence Viewer

Length: 870 bp
atgtctacttccaacatggaagcttcaggtgttgatcagcgagacaagtatcgttcttacatgtatggagatggagagaagaacacacaatggagatctggtgcccctcctaactacgatgttgttaacaagctctttgaagaaggcagaaccaagatatggccagctgggtcactggaagaaaaagttcagaaccttttgaagacatacgagatggagatttcccacaaagcaaaccctcaggacttcaaatctattgatccagaaaagttcactttcgtccagaatgggaaagaaccgctgactattgaagatattacgaaaatgggtggagtctataatgtagatctgcaaagctctctacctgaggagtttcagatctacaaacccgcagaggaaacagcagaatcgtctcataagcttttcaccactacttttccacgtggatttgcaatcgaggtccttgaggtctattccggtccgccggtgatagcctacaagttcaggcactggtcttacatggaaggtcctttcaaagggtatgcccctactggagaattggttcaattctttggcattgcaattttcagggtggatgagcagatgagaattgtaaaggtggagttcttttacgatcctgcagaacttcttggagggctgacgaagggtgtccagaactggcggcagaacaaccaaaaccggcgtgaaaccaaccgaatcggccactgcaagttcaaaaccacccgcagcaaatactttaccggttcaccaccttccggacctccgattgctaccaaattaagctaccagaagtgccgcctctacccatggatcctggaaccggaaaaatctttcccggaaccaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

33.28

Weight (kDa)

6.93

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 159
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 776
AciI CCGC 6 cut(s) 299, 390, 482, 682, 745, 817
AclWI GGATC 4 cut(s) 254, 629, 826, 839
AcoI YGGCCR 2 cut(s) 161, 721
AcuI CTGAAG 1 cut(s) 9
AcvI CACGTG 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 159, 536, 776, 841
AflIII ACRYGT 1 cut(s) 60
AgeI ACCGGT 1 cut(s) 761
AgsI TTSAA 7 cut(s) 140, 202, 250, 311, 535, 566, 736
AjnI CCWGG 1 cut(s) 834
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 6 cut(s) 23, 133, 167, 357, 421, 804
AluI AGCT 6 cut(s) 23, 133, 167, 357, 421, 804
Alw26I GTCTC 2 cut(s) 36, 417
AlwI GGATC 4 cut(s) 254, 629, 826, 839
AlwNI CAGNNNCTG 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 776
AoxI GGCC 2 cut(s) 161, 721
ApeKI GCWGC 1 cut(s) 747
AsiGI ACCGGT 1 cut(s) 761
Asp700I GAANNNNTTC 2 cut(s) 186, 561
AspS9I GGNCC 4 cut(s) 460, 479, 527, 779
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 3 cut(s) 418, 499, 759
AvaII GGWCC 4 cut(s) 460, 479, 527, 779
AxyI CCTNAGG 2 cut(s) 240, 366
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 163
BamHI GGATCC 1 cut(s) 831
BanI GGYRCC 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 759
BccI CCATC 2 cut(s) 65, 208
BciT130I CCWGG 1 cut(s) 836
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 36, 417
BfmI CTRYAG 1 cut(s) 639
BglII AGATCT 3 cut(s) 95, 346, 378
BisI GCNGC 3 cut(s) 683, 748, 817
BlsI GCNGC 3 cut(s) 684, 749, 818
Bme1390I CCNGG 2 cut(s) 836, 857
Bme18I GGWCC 4 cut(s) 460, 479, 527, 779
BmgT120I GGNCC 4 cut(s) 460, 479, 527, 779
BmiI GGNNCC 4 cut(s) 103, 833, 840, 861
BmrFI CCNGG 2 cut(s) 836, 857
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 857
BsaAI YACGTR 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 827
BsaWI WCCGGW 4 cut(s) 476, 761, 776, 841
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 546, 576
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 536, 776, 841
Bse118I RCCGGY 3 cut(s) 484, 699, 761
Bse1I ACTGG 4 cut(s) 180, 515, 556, 683
Bse21I CCTNAGG 2 cut(s) 240, 366
Bse3DI GCAATG 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 776
BseBI CCWGG 1 cut(s) 836
BseDI CCNNGG 1 cut(s) 827
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 159, 536, 776, 841
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 254, 357
BseNI ACTGG 4 cut(s) 180, 515, 556, 683
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 759
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 2 cut(s) 163, 723
BshNI GGYRCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 761
BsiSI CCGG 7 cut(s) 477, 485, 700, 762, 777, 842, 857
BslI CCNNNNNNNGG 4 cut(s) 159, 536, 776, 841
BsmAI GTCTC 2 cut(s) 36, 417
BsmBI CGTCTC 1 cut(s) 417
BsnI GGCC 2 cut(s) 163, 723
Bsp1286I GDGCHC 1 cut(s) 106
Bsp13I TCCGGA 1 cut(s) 776
Bsp143I GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 6 cut(s) 299, 390, 482, 682, 745, 817
BspANI GGCC 2 cut(s) 163, 723
BspCNI CTCAG 2 cut(s) 253, 358
BspEI TCCGGA 1 cut(s) 776
BspLI GGNNCC 4 cut(s) 103, 833, 840, 861
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 4 cut(s) 254, 629, 826, 839
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 3 cut(s) 484, 699, 761
BsrI ACTGG 4 cut(s) 180, 515, 556, 683
BssAI RCCGGY 3 cut(s) 484, 699, 761
BssECI CCNNGG 1 cut(s) 827
BssMI GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
BssT1I CCWWGG 1 cut(s) 827
Bst2UI CCWGG 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 240, 366
BstDSI CCRYGG 1 cut(s) 827
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 7 cut(s) 37, 98, 262, 349, 381, 637, 834
BstMAI GTCTC 2 cut(s) 36, 417
BstMBI GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 834, 855
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 759
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 4 cut(s) 95, 346, 378, 831
BstYI RGATCY 4 cut(s) 95, 346, 378, 831
Bsu36I CCTNAGG 2 cut(s) 240, 366
BsuRI GGCC 2 cut(s) 163, 723
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 3 cut(s) 173, 508, 724
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 510
Cfr10I RCCGGY 3 cut(s) 484, 699, 761
Cfr13I GGNCC 4 cut(s) 460, 479, 527, 779
CpoI CGGWCCG 1 cut(s) 479
CspAI ACCGGT 1 cut(s) 761
CspI CGGWCCG 1 cut(s) 479
CviAII CATG 4 cut(s) 16, 61, 520, 828
DdeI CTNAG 2 cut(s) 240, 366
DpnI GATC 7 cut(s) 36, 97, 261, 348, 380, 636, 833
DpnII GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
EaeI YGGCCR 2 cut(s) 161, 721
EciI GGCGGA 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 827
Eco47I GGWCC 4 cut(s) 460, 479, 527, 779
Eco57I CTGAAG 1 cut(s) 9
Eco72I CACGTG 1 cut(s) 443
Eco81I CCTNAGG 2 cut(s) 240, 366
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO109I RGGNCCY 2 cut(s) 460, 527
EcoRII CCWGG 1 cut(s) 834
EcoT14I CCWWGG 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 827
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 4 cut(s) 19, 64, 523, 831
FatI CATG 4 cut(s) 15, 60, 519, 827
FauI CCCGC 2 cut(s) 397, 752
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 683, 748, 817
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 3 cut(s) 683, 748, 817
GluI GCNGC 3 cut(s) 683, 748, 817
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 2 cut(s) 163, 723
HapII CCGG 7 cut(s) 477, 485, 700, 762, 777, 842, 857
Hin1II CATG 4 cut(s) 19, 64, 523, 831
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 2 cut(s) 21, 419
HinfI GANTC 3 cut(s) 333, 407, 717
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 7 cut(s) 477, 485, 700, 762, 777, 842, 857
HphI GGTGA 3 cut(s) 418, 499, 759
Hpy166II GTNNAC 4 cut(s) 6, 127, 273, 767
Hpy188I TCNGA 3 cut(s) 192, 378, 786
Hpy188III TCNNGA 5 cut(s) 242, 263, 283, 673, 777
Hpy8I GTNNAC 4 cut(s) 6, 127, 273, 767
HpyAV CCTTC 4 cut(s) 137, 518, 658, 783
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 352, 452, 581, 641, 729
HpyF3I CTNAG 2 cut(s) 240, 366
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 4 cut(s) 19, 64, 523, 831
Kpn2I TCCGGA 1 cut(s) 776
Ksp22I TGATCA 1 cut(s) 34
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
Lsp1109I GCAGC 1 cut(s) 759
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 171
MalI GATC 7 cut(s) 36, 97, 261, 348, 380, 636, 833
MboI GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
MboII GAAGA 5 cut(s) 91, 152, 191, 214, 323
MflI RGATCY 4 cut(s) 95, 346, 378, 831
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 5 cut(s) 557, 566, 582, 609, 797
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 9 cut(s) 117, 249, 361, 388, 451, 460, 647, 792, 830
Mox20I TGGCCA 1 cut(s) 163
MroI TCCGGA 1 cut(s) 776
MroXI GAANNNNTTC 2 cut(s) 186, 561
MscI TGGCCA 1 cut(s) 163
MseI TTAA 3 cut(s) 126, 800, 868
Msp20I TGGCCA 1 cut(s) 163
MspA1I CMGCKG 2 cut(s) 167, 301
MspI CCGG 7 cut(s) 477, 485, 700, 762, 777, 842, 857
MspR9I CCNGG 2 cut(s) 836, 857
MvaI CCWGG 1 cut(s) 836
NciI CCSGG 1 cut(s) 857
NcoI CCATGG 1 cut(s) 827
NdeII GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
NlaIII CATG 4 cut(s) 19, 64, 523, 831
NlaIV GGNNCC 4 cut(s) 103, 833, 840, 861
NmuCI GTSAC 1 cut(s) 171
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 186, 561
PfeI GAWTC 2 cut(s) 407, 717
PflMI CCANNNNNTGG 1 cut(s) 159
PfoI TCCNGGA 2 cut(s) 834, 855
PinAI ACCGGT 1 cut(s) 761
PkrI GCNGC 3 cut(s) 684, 749, 818
PleI GAGTC 1 cut(s) 341
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 443
PpuMI RGGWCCY 2 cut(s) 460, 527
PscI ACATGT 1 cut(s) 60
Psp5II RGGWCCY 2 cut(s) 460, 527
Psp6I CCWGG 1 cut(s) 834
PspCI CACGTG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 834
PspN4I GGNNCC 4 cut(s) 103, 833, 840, 861
PspPI GGNCC 4 cut(s) 460, 479, 527, 779
PspPPI RGGWCCY 2 cut(s) 460, 527
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 510
PsuI RGATCY 4 cut(s) 95, 346, 378, 831
PvuII CAGCTG 1 cut(s) 167
Rsr2I CGGWCCG 1 cut(s) 479
RsrII CGGWCCG 1 cut(s) 479
SaqAI TTAA 3 cut(s) 126, 800, 868
SatI GCNGC 3 cut(s) 683, 748, 817
Sau3AI GATC 7 cut(s) 34, 95, 259, 346, 378, 634, 831
Sau96I GGNCC 4 cut(s) 460, 479, 527, 779
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 2 cut(s) 836, 857
SduI GDGCHC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 639
SgrAI CRCCGGYG 1 cut(s) 484
SinI GGWCC 4 cut(s) 460, 479, 527, 779
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 5 cut(s) 557, 566, 582, 609, 797
SsiI CCGC 6 cut(s) 299, 390, 482, 682, 745, 817
StyD4I CCNGG 2 cut(s) 834, 855
StyI CCWWGG 1 cut(s) 827
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 456
TasI AATT 5 cut(s) 557, 566, 582, 609, 797
TauI GCSGC 2 cut(s) 685, 819
TfiI GAWTC 2 cut(s) 407, 717
Tru1I TTAA 3 cut(s) 126, 800, 868
Tru9I TTAA 3 cut(s) 126, 800, 868
TscAI CASTG 3 cut(s) 180, 515, 731
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 1 cut(s) 747
Tsp45I GTSAC 1 cut(s) 171
TspRI CASTG 3 cut(s) 180, 515, 731
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 4 cut(s) 460, 479, 527, 779
XagI CCTNNNNNAGG 1 cut(s) 534
XceI RCATGY 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 186, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.