Rmu_sc0004481.1_g000009

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004481.1
OG0000669
Physical Location & Seq
Forward (+)
45376 .. 46333
958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004481.1_g000009.1.cds

Sequence Viewer

Length: 681 bp
atggcttcttcaggagttgagggagacgattatcgttactatttgcatggagaagaagagaagaacaccaaatggaggtatggttccccaccaaactatgatgttgtcaacaagctctttcacgaaggcagaaccaagaaccttgtaaagacatgggagatggagttgtttcataagacaagtgatgcagactataaatcgcttgatcctaataactacacatttagcctaaatggaagaaaaggtataagtttggcagagaagcgaaagcttggaggaggctacaactctttgctgcaaacctctttgccaaatgagttccggtgctacaacccggctgaagaaaccgtggattcatctcatcgggctttcacaactgccttcccacgcggttttgctctcgagattctccatgtgtattctggtcccccagaaattgtgtacaagttcaggcactggggttacatggaaggtcccttcaaaggtcatgcccctactggagaattagttgaactctttgggatggcagtgtttcagttggatgaatctgagaaagttgtgagtgttgagttctttttcgaccgtggtgaactcctcggggggcttctgaagggtgcaagcatcgacagttctagtgaagaggtggcaccaacttgcccatacttgaggaacacagggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.57

Weight (kDa)

5.55

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 646
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 360, 629
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 75, 482
AgsI TTSAA 2 cut(s) 481, 512
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 115, 271
AluI AGCT 2 cut(s) 115, 271
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 456
Ama87I CYCGRG 2 cut(s) 401, 596
ApeKI GCWGC 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 425, 473
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 599
AvaI CYCGRG 2 cut(s) 401, 596
AvaII GGWCC 2 cut(s) 425, 473
BanI GGYRCC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 154, 517
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 633
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 2 cut(s) 425, 473
BmeT110I CYCGRG 2 cut(s) 401, 596
BmgT120I GGNCC 2 cut(s) 425, 473
BmiI GGNNCC 4 cut(s) 85, 427, 475, 648
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 175, 630
BmuI ACTGGG 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 348, 583, 595
BsaWI WCCGGW 1 cut(s) 321
BsaXI ACNNNNNCTCC 6 cut(s) 67, 97, 149, 179, 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 482
Bse1I ACTGG 2 cut(s) 461, 502
BseDI CCNNGG 3 cut(s) 348, 583, 595
BseGI GGATG 2 cut(s) 528, 547
BseLI CCNNNNNNNGG 2 cut(s) 75, 482
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 461, 502
BseRI GAGGAG 2 cut(s) 291, 584
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 390
Bsh1285I CGRYCG 1 cut(s) 583
BshNI GGYRCC 1 cut(s) 646
BsiEI CGRYCG 1 cut(s) 583
BsiHKCI CYCGRG 2 cut(s) 401, 596
BsiSI CCGG 2 cut(s) 322, 335
BslFI GGGAC 2 cut(s) 411, 459
BslI CCNNNNNNNGG 2 cut(s) 75, 482
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 411, 459
BsoBI CYCGRG 2 cut(s) 401, 596
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 541
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 4 cut(s) 85, 427, 475, 648
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 646
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 2 cut(s) 461, 502
BssECI CCNNGG 3 cut(s) 348, 583, 595
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 3 cut(s) 349, 584, 629
Bst6I CTCTTC 2 cut(s) 51, 633
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 1 cut(s) 549
BstDSI CCRYGG 2 cut(s) 348, 583
BstF5I GGATG 2 cut(s) 528, 547
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 333
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 348, 583
BtsCI GGATG 2 cut(s) 528, 547
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 454, 534
Cac8I GCNNGC 1 cut(s) 619
CaiI CAGNNNCTG 1 cut(s) 456
Cfr13I GGNCC 2 cut(s) 425, 473
Csp6I GTAC 1 cut(s) 442
CviAII CATG 5 cut(s) 47, 153, 413, 466, 488
CviJI RGCY 8 cut(s) 5, 115, 228, 271, 282, 338, 368, 604
CviKI_1 RGCY 8 cut(s) 5, 115, 228, 271, 282, 338, 368, 604
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 549
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 51, 633
EarI CTCTTC 2 cut(s) 51, 633
Eco47I GGWCC 2 cut(s) 425, 473
Eco57I CTGAAG 2 cut(s) 360, 629
Eco88I CYCGRG 2 cut(s) 401, 596
EcoO109I RGGNCCY 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 5 cut(s) 50, 156, 416, 469, 491
FaqI GGGAC 2 cut(s) 411, 459
FatI CATG 5 cut(s) 46, 152, 412, 465, 487
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 535, 554
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 633
GluI GCNGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 519
HapII CCGG 2 cut(s) 322, 335
Hin1II CATG 5 cut(s) 50, 156, 416, 469, 491
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 3 cut(s) 353, 406, 545
HpaII CCGG 2 cut(s) 322, 335
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 3 cut(s) 109, 442, 590
Hpy188I TCNGA 2 cut(s) 550, 609
Hpy188III TCNNGA 4 cut(s) 12, 122, 401, 403
Hpy8I GTNNAC 3 cut(s) 109, 442, 590
HpyAV CCTTC 5 cut(s) 119, 391, 464, 487, 604
HpyCH4III ACNGT 3 cut(s) 349, 584, 629
HpyCH4V TGCA 4 cut(s) 46, 188, 298, 617
HpyF3I CTNAG 1 cut(s) 549
Hsp92II CATG 5 cut(s) 50, 156, 416, 469, 491
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 335, 348, 408, 436, 442, 444, 483, 660
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 175, 630
MaeI CTAG 1 cut(s) 633
MaeIII GTNAC 2 cut(s) 35, 461
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 6 cut(s) 65, 68, 73, 249, 353, 650
MluCI AATT 2 cut(s) 435, 503
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 8 cut(s) 13, 69, 269, 272, 313, 605, 634, 660
MspI CCGG 2 cut(s) 322, 335
MspR9I CCNGG 1 cut(s) 335
MvnI CGCG 1 cut(s) 390
NciI CCSGG 1 cut(s) 335
NdeII GATC 1 cut(s) 205
NlaIII CATG 5 cut(s) 50, 156, 416, 469, 491
NlaIV GGNNCC 4 cut(s) 85, 427, 475, 648
PaeR7I CTCGAG 1 cut(s) 401
PfeI GAWTC 3 cut(s) 353, 406, 545
PkrI GCNGC 1 cut(s) 297
PpuMI RGGWCCY 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 473
PspN4I GGNNCC 4 cut(s) 85, 427, 475, 648
PspPI GGNCC 2 cut(s) 425, 473
PspPPI RGGWCCY 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 456
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 425, 473
ScrFI CCNGG 1 cut(s) 335
SetI ASST 9 cut(s) 80, 117, 144, 247, 273, 305, 475, 487, 645
SfaNI GCATC 2 cut(s) 175, 630
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 2 cut(s) 425, 473
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 401, 664
SmoI CTYRAG 2 cut(s) 401, 664
Sse9I AATT 2 cut(s) 435, 503
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 349, 584, 629
TaqI TCGA 3 cut(s) 402, 579, 624
TasI AATT 2 cut(s) 435, 503
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 3 cut(s) 353, 406, 545
TscAI CASTG 2 cut(s) 461, 534
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 161, 345, 558
TspRI CASTG 2 cut(s) 461, 534
VpaK11BI GGWCC 2 cut(s) 425, 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 401
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.