AT1G78810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000926
Physical Location & Seq
Reverse (-)
29628234 .. 29630578
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78810.2

Sequence Viewer

Length: 1446 bp
ATGATGAATATTTACGACGATGAATCTCTGAAGCAAGAAGTAATCTACCTTCACTCCCTCTGGCATCAAGGTCCTCCTACCCGAAAACCAATCCCTAGCCCTAATTTCAACCTGATTCACGACCCGATTCAACGACCCAGACCGAATTACATCCCGCCGTCTGATTTGCAACTTCTCTCTCGCTATGGAGCTGTTACTCCACAGATCATATCCAGAAACCCTAATAATCCTCAAAATCTCTACAATAACAACAAACGTCCTAGGCCTGATTCGGGTCGAGAATGGCCCGTCAATGACGTGCCTCAGCCTCCTTCTACGGGATCTGGATGGCCGGAATACAGGCCGTGTAAAAAGACTCGACCTATTTCGGCCGAGGAGAAAGAGAAATTGGCGGCGAATATGCTTCAGAGAGATATCCATCGCACCTGTCGCGAGTTCTTCGGTCGAAAATCCGGTGAAGAAGATAGCTCAGTCGCCGGAGGAGATGAATCGGAAATCGATGAAGGAGACGAAGATCAGTCTTTGGAGAAAGAAGAATCTTCTTCTTCCAAGGAGTTTCAGTTTCTATCGAGAGTTTTTGAAGAGAATGTGAAGTTGAAGGAATACTATGAGAAGAACACTGGGAATGGAGAGTTTTGGTGTTTGGTTTGTGGTGGCATTGGAGAGAAAAGTTGTAGGAAGTTCAAGAGCTGCTTAGCTTTAATTCAGCATTCACTTACTATTCACAAGACGGATTTGAAAATTCAGCATAGAGCTCTCGCTCAAGTTGTCTGCAATGTTCTTGGCTGGGACGTTAACAATCCAGTTGTTTCTAGCCAAAAAGATTCTCAGACGGTTGTGGAAGGTGCATCTGAGCCGCCTTCAGACTCGAAGATTCCTCAGGAGAAACAACAGGTCATGTCGGTTGAAGAACACGCAAAGGCTGCGGTGTTACAAATGCAACAGAATGCATCAGAAGCTTTGAAAGACATTTTTGTCAAGGATGGTACTGGTGCAGCTGATGGAACTGAGGAGAACGGTGATGAGAATCTGTCTGAGGAGTTGGAGTTAATATCTAAAGTCTTCTCCGAGAATGTTGAGCTCAAGAGTTACTATGAGAAAAACTATGAAGGTGGAGCTTTTATCTGTCTGGTGTGTTGTGCTGCGACTGATAAGAAGATGTTAAAAAGATTCAAACACTGTTATGGAGTTGTTCAACATTGTACTAAAGTACCAAAAATGAAAATACGAGCTCACAAGGTTTTCGCTCAGTTTGTCTGTGAACTACTTGGCTGGGATTTTGAGCTTCTACCACGTAGAGTAATGAAAGGCGTTGCTTCTCTTGCTATATCTAATGCTAACGAGAACAATGAGAACACATCATCCATGGTCGAGGAACATATGTGCGAAGATAAAGCTGGTAACCCACAGGACAACAATGAGGCTGAGGCATGCGTTGAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

481

Amino Acids

54.21

Weight (kDa)

5.37

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 974
AccII CGCG 1 cut(s) 432
AciI CCGC 4 cut(s) 155, 392, 857, 926
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 2 cut(s) 329, 369
AcsI RAATTY 1 cut(s) 741
AcuI CTGAAG 3 cut(s) 50, 389, 846
AfaI GTAC 3 cut(s) 988, 1204, 1212
AfiI CCNNNNNNNGG 2 cut(s) 272, 317
AjiI CACGTC 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AloI GAACNNNNNNTCC 2 cut(s) 1346, 1378
Alw21I GWGCWC 3 cut(s) 757, 1083, 1234
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 328
AoxI GGCC 5 cut(s) 263, 284, 329, 341, 369
ApeKI GCWGC 4 cut(s) 690, 923, 995, 1142
ApoI RAATTY 1 cut(s) 741
AspA2I CCTAGG 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 71, 285
AsuHPI GGTGA 2 cut(s) 467, 1031
AvaII GGWCC 1 cut(s) 71
AvrII CCTAGG 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 879
BaeI ACNNNNGTAYC 2 cut(s) 1194, 1227
BanII GRGCYC 3 cut(s) 757, 1083, 1234
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbsI GAAGAC 1 cut(s) 1054
Bbv12I GWGCWC 3 cut(s) 757, 1083, 1234
BbvCI CCTCAGC 2 cut(s) 303, 1425
BbvI GCAGC 4 cut(s) 677, 910, 1007, 1129
BccI CCATC 4 cut(s) 321, 426, 977, 995
BceAI ACGGC 2 cut(s) 142, 328
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 3 cut(s) 96, 261, 813
BisI GCNGC 6 cut(s) 393, 691, 857, 924, 996, 1143
BlnI CCTAGG 1 cut(s) 260
BlpI GCTNAGC 1 cut(s) 694
BlsI GCNGC 6 cut(s) 394, 692, 858, 925, 997, 1144
Bme18I GGWCC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 71, 285
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 3 cut(s) 73, 857, 959
BmuI ACTGGG 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 1054
Bpu10I CCTNAGC 2 cut(s) 303, 1425
Bpu1102I GCTNAGC 1 cut(s) 694
BpuEI CTTGAG 2 cut(s) 747, 1067
Bsa29I ATCGAT 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 1295
BsaBI GATNNNNATC 2 cut(s) 417, 1026
BsaJI CCNNGG 4 cut(s) 260, 372, 549, 1365
BsaWI WCCGGW 1 cut(s) 452
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 545, 575, 1031, 1061
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 317
Bse1I ACTGG 3 cut(s) 625, 803, 994
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 2 cut(s) 417, 1026
BseCI ATCGAT 1 cut(s) 498
BseDI CCNNGG 4 cut(s) 260, 372, 549, 1365
BseGI GGATG 4 cut(s) 150, 332, 988, 1361
BseJI GATNNNNATC 2 cut(s) 417, 1026
BseLI CCNNNNNNNGG 2 cut(s) 272, 317
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 9 cut(s) 317, 483, 842, 843, 893, 999, 1026, 1262, 1416
BseNI ACTGG 3 cut(s) 625, 803, 994
BseRI GAGGAG 4 cut(s) 389, 495, 1025, 1052
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 677, 910, 1007, 1129
BseYI CCCAGC 2 cut(s) 786, 1272
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 432
Bsh1285I CGRYCG 2 cut(s) 372, 445
BshFI GGCC 5 cut(s) 265, 286, 331, 343, 371
BshVI ATCGAT 1 cut(s) 498
BsiEI CGRYCG 2 cut(s) 372, 445
BsiHKAI GWGCWC 3 cut(s) 757, 1083, 1234
BsiSI CCGG 3 cut(s) 332, 453, 477
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 272, 317
BsmAI GTCTC 1 cut(s) 501
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 2 cut(s) 709, 952
BsnI GGCC 5 cut(s) 265, 286, 331, 343, 371
Bsp1286I GDGCHC 3 cut(s) 757, 1083, 1234
Bsp143I GATC 3 cut(s) 204, 320, 514
Bsp1720I GCTNAGC 1 cut(s) 694
Bsp19I CCATGG 1 cut(s) 1365
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 4 cut(s) 155, 392, 857, 926
BspANI GGCC 5 cut(s) 265, 286, 331, 343, 371
BspCNI CTCAG 9 cut(s) 316, 482, 841, 844, 892, 1000, 1027, 1261, 1417
BspDI ATCGAT 1 cut(s) 498
BspFNI CGCG 1 cut(s) 432
BspPI GGATC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 3 cut(s) 625, 803, 994
BssECI CCNNGG 4 cut(s) 260, 372, 549, 1365
BssMI GATC 3 cut(s) 204, 320, 514
BssT1I CCWWGG 3 cut(s) 260, 549, 1365
Bst4CI ACNGT 3 cut(s) 835, 1019, 1181
Bst6I CTCTTC 1 cut(s) 576
BstAPI GCANNNNNTGC 1 cut(s) 923
BstBAI YACGTR 1 cut(s) 1295
BstC8I GCNNGC 1 cut(s) 1432
BstDSI CCRYGG 1 cut(s) 1365
BstEII GGTNACC 1 cut(s) 1400
BstF5I GGATG 4 cut(s) 150, 332, 988, 1361
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 3 cut(s) 207, 323, 517
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 204, 320, 514
BstMCI CGRYCG 2 cut(s) 372, 445
BstMWI GCNNNNNNNGC 4 cut(s) 429, 923, 956, 1322
BstNSI RCATGY 1 cut(s) 1434
BstPI GGTNACC 1 cut(s) 1400
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 4 cut(s) 677, 910, 1007, 1129
BstV2I GAAGAC 1 cut(s) 1054
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BstZI CGGCCG 1 cut(s) 369
Bsu15I ATCGAT 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 5 cut(s) 265, 286, 331, 343, 371
BsuTUI ATCGAT 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 1365
BtgZI GCGATG 1 cut(s) 404
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 4 cut(s) 150, 332, 988, 1361
BtsIMutI CAGTG 2 cut(s) 618, 1177
BtuMI TCGCGA 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 1432
Cfr13I GGNCC 2 cut(s) 71, 285
ClaI ATCGAT 1 cut(s) 498
Csp6I GTAC 3 cut(s) 987, 1203, 1211
CviAII CATG 3 cut(s) 898, 1366, 1431
CviQI GTAC 3 cut(s) 987, 1203, 1211
DpnI GATC 3 cut(s) 206, 322, 516
DpnII GATC 3 cut(s) 204, 320, 514
DrdI GACNNNNNNGTC 1 cut(s) 974
DseDI GACNNNNNNGTC 1 cut(s) 974
EaeI YGGCCR 2 cut(s) 329, 369
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Ecl136II GAGCTC 3 cut(s) 755, 1081, 1232
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 3 cut(s) 260, 549, 1365
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 3 cut(s) 757, 1083, 1234
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 71
Eco52I CGGCCG 1 cut(s) 369
Eco53kI GAGCTC 3 cut(s) 755, 1081, 1232
Eco57I CTGAAG 3 cut(s) 50, 389, 846
Eco81I CCTNAGG 1 cut(s) 879
Eco91I GGTNACC 1 cut(s) 1400
EcoICRI GAGCTC 3 cut(s) 755, 1081, 1232
EcoO109I RGGNCCY 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 1400
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 3 cut(s) 260, 549, 1365
EcoT22I ATGCAT 1 cut(s) 952
EcoT38I GRGCYC 3 cut(s) 757, 1083, 1234
ErhI CCWWGG 3 cut(s) 260, 549, 1365
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 3 cut(s) 901, 1369, 1434
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FaqI GGGAC 1 cut(s) 803
FatI CATG 3 cut(s) 897, 1365, 1430
FauI CCCGC 1 cut(s) 162
FauNDI CATATG 1 cut(s) 1380
Fnu4HI GCNGC 6 cut(s) 393, 691, 857, 924, 996, 1143
FokI GGATG 4 cut(s) 137, 339, 995, 1348
FriOI GRGCYC 3 cut(s) 757, 1083, 1234
Fsp4HI GCNGC 6 cut(s) 393, 691, 857, 924, 996, 1143
FspBI CTAG 3 cut(s) 96, 261, 813
GluI GCNGC 6 cut(s) 393, 691, 857, 924, 996, 1143
GsaI CCCAGC 2 cut(s) 790, 1276
HaeIII GGCC 5 cut(s) 265, 286, 331, 343, 371
HapII CCGG 3 cut(s) 332, 453, 477
Hin1II CATG 3 cut(s) 901, 1369, 1434
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 957
HpaI GTTAAC 1 cut(s) 796
HpaII CCGG 3 cut(s) 332, 453, 477
HphI GGTGA 2 cut(s) 467, 1031
Hpy166II GTNNAC 2 cut(s) 796, 1262
Hpy188III TCNNGA 9 cut(s) 119, 213, 278, 324, 431, 570, 685, 881, 1084
Hpy8I GTNNAC 2 cut(s) 796, 1262
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 7 cut(s) 59, 321, 497, 592, 836, 870, 1103
HpyCH4III ACNGT 3 cut(s) 835, 1019, 1181
HpyCH4IV ACGT 4 cut(s) 256, 297, 792, 1294
HpyCH4V TGCA 6 cut(s) 169, 774, 848, 940, 950, 995
HpyF10VI GCNNNNNNNGC 4 cut(s) 429, 923, 956, 1322
HpySE526I ACGT 4 cut(s) 256, 297, 792, 1294
Hsp92II CATG 3 cut(s) 901, 1369, 1434
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 3 cut(s) 204, 320, 514
LmnI GCTCC 2 cut(s) 188, 1115
Lsp1109I GCAGC 4 cut(s) 677, 910, 1007, 1129
LweI GCATC 3 cut(s) 73, 857, 959
MaeI CTAG 3 cut(s) 96, 261, 813
MaeII ACGT 4 cut(s) 256, 297, 792, 1294
MaeIII GTNAC 4 cut(s) 193, 930, 1088, 1400
MalI GATC 3 cut(s) 206, 322, 516
MboI GATC 3 cut(s) 204, 320, 514
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 3 cut(s) 757, 1083, 1234
MluCI AATT 5 cut(s) 103, 145, 386, 702, 741
MlyI GAGTC 2 cut(s) 349, 860
MmeI TCCRAC 1 cut(s) 1023
Mph1103I ATGCAT 1 cut(s) 952
MseI TTAA 5 cut(s) 701, 795, 1049, 1163, 1444
MslI CAYNNNNRTG 1 cut(s) 1182
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 3 cut(s) 332, 453, 477
Mva1269I GAATGC 2 cut(s) 709, 952
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 4 cut(s) 429, 923, 956, 1322
NcoI CCATGG 1 cut(s) 1365
NdeI CATATG 1 cut(s) 1380
NdeII GATC 3 cut(s) 204, 320, 514
NlaIII CATG 3 cut(s) 901, 1369, 1434
NmeAIII GCCGAG 1 cut(s) 397
NruI TCGCGA 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 1 cut(s) 1434
PaeI GCATGC 1 cut(s) 1434
PceI AGGCCT 1 cut(s) 265
PctI GAATGC 2 cut(s) 709, 952
PkrI GCNGC 6 cut(s) 394, 692, 858, 925, 997, 1144
PleI GAGTC 2 cut(s) 349, 860
PpsI GAGTC 2 cut(s) 349, 860
Ppu21I YACGTR 1 cut(s) 1295
PpuMI RGGWCCY 1 cut(s) 71
Psp124BI GAGCTC 3 cut(s) 757, 1083, 1234
Psp5II RGGWCCY 1 cut(s) 71
PspEI GGTNACC 1 cut(s) 1400
PspFI CCCAGC 2 cut(s) 786, 1272
PspPI GGNCC 2 cut(s) 71, 285
PspPPI RGGWCCY 1 cut(s) 71
PsuI RGATCY 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 998
RruI TCGCGA 1 cut(s) 432
RsaI GTAC 3 cut(s) 988, 1204, 1212
RsaNI GTAC 3 cut(s) 987, 1203, 1211
RseI CAYNNNNRTG 1 cut(s) 1182
SacI GAGCTC 3 cut(s) 757, 1083, 1234
SaqAI TTAA 5 cut(s) 701, 795, 1049, 1163, 1444
SatI GCNGC 6 cut(s) 393, 691, 857, 924, 996, 1143
Sau3AI GATC 3 cut(s) 204, 320, 514
Sau96I GGNCC 2 cut(s) 71, 285
SchI GAGTC 2 cut(s) 349, 860
SduI GDGCHC 3 cut(s) 757, 1083, 1234
SfaNI GCATC 3 cut(s) 73, 857, 959
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 1182
SmlI CTYRAG 2 cut(s) 762, 1082
SmoI CTYRAG 2 cut(s) 762, 1082
SphI GCATGC 1 cut(s) 1434
Sse9I AATT 5 cut(s) 103, 145, 386, 702, 741
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 4 cut(s) 155, 392, 857, 926
SspI AATATT 1 cut(s) 10
SspMI CTAG 3 cut(s) 96, 261, 813
SstI GAGCTC 3 cut(s) 757, 1083, 1234
StuI AGGCCT 1 cut(s) 265
StyI CCWWGG 3 cut(s) 260, 549, 1365
TaaI ACNGT 3 cut(s) 835, 1019, 1181
TaiI ACGT 4 cut(s) 259, 300, 795, 1297
TaqI TCGA 7 cut(s) 277, 358, 445, 498, 569, 869, 1371
TaqII GACCGA 2 cut(s) 157, 431
TasI AATT 5 cut(s) 103, 145, 386, 702, 741
TatI WGTACW 1 cut(s) 1202
TauI GCSGC 2 cut(s) 395, 859
Tru1I TTAA 5 cut(s) 701, 795, 1049, 1163, 1444
Tru9I TTAA 5 cut(s) 701, 795, 1049, 1163, 1444
TscAI CASTG 2 cut(s) 625, 1184
TseI GCWGC 4 cut(s) 690, 923, 995, 1142
TspDTI ATGAA 7 cut(s) 20, 36, 501, 516, 1122, 1235, 1319
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 625, 1184
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 741
XceI RCATGY 1 cut(s) 1434
XmaJI CCTAGG 1 cut(s) 260
XspI CTAG 3 cut(s) 96, 261, 813
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.