RchiOBHm_Chr1g0357411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000926
Physical Location & Seq
Forward (+)
49797900 .. 49799100
1201 bp
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UTR
Exon/CDS
Intron
PRQ58267

Sequence Viewer

Length: 741 bp
ATGCCGGGTCGGGTTGGAGATAAGGAGAATGAGGAGTACAAGTTTTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATGGTGGTGAGTTCCATTGCTTGGTGTGTGGTGGGTTGGGGAAGACGAAGAAGATCAAGGGTTGTGTCGGGCTTGTTCACCACGCGGTTTCGATAAGCAAGACGAAGAAGAAGAGAGCTCATAGGGCTTTTGCTCAGGTTGTGTGTAGGGTTTTAGGGTGGGATTTTGACCGGCTGCCCATTGTTGTGCTCAAAGGCGAAAGGCTCAGTTTTTATTTGGCAAAACCGGGCGATGAACGGGGTGAGAGTGAGGTAAATGCTGGTGCTAGTGAGGCTGTTTCGGGTGCTGTTAAAGACAATGTGGGAGATGAAAAGGATGGTAATGCCGAGTCAGGTGAAAAGGAAGCATCTAATGGAGACCTAATGATTTGTCAGAAATCTTTGAAAGATGATGATGCAAATCAATGCAAAGAAACCCTTAATAAGGGGATATCAGAAATCAAAGAAGAGAAAGAAGAGGCAATGGATACGCGGAGTGAGCCTGAGTTAAATGTTGACCAGTTGGATAGTGCACTGAAAGACAATGTGGCAGCTGAAACTGATGCTCCTGCTGAATATAGTGAAAAGGAGGCATTTGATGATCATCAGTGCAATGGTAAAGAACCAATCATCTGTCAGGTTAGTCATCACTGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.05

Weight (kDa)

4.98

Isoelectric Point (pI)

25.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AccII CGCG 2 cut(s) 188, 574
AciI CCGC 2 cut(s) 188, 574
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 124, 526
AgsI TTSAA 2 cut(s) 52, 487
AluBI AGCT 2 cut(s) 221, 635
AluI AGCT 2 cut(s) 221, 635
Alw21I GWGCWC 3 cut(s) 223, 294, 616
Alw26I GTCTC 1 cut(s) 453
Alw44I GTGCAC 1 cut(s) 612
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 277, 632
ApoI RAATTY 1 cut(s) 52
AsuC2I CCSGG 2 cut(s) 6, 330
AsuHPI GGTGA 4 cut(s) 122, 173, 356, 449
BaeGI GKGCMC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 3 cut(s) 223, 294, 616
BbvI GCAGC 2 cut(s) 264, 644
BccI CCATC 2 cut(s) 98, 413
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 2 cut(s) 6, 330
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 2 cut(s) 369, 739
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 2 cut(s) 278, 633
BlsI GCNGC 2 cut(s) 279, 634
Bme1390I CCNGG 2 cut(s) 6, 330
BmrFI CCNGG 2 cut(s) 6, 330
BmsI GCATC 3 cut(s) 458, 487, 634
BpiI GAAGAC 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 6, 330
BsaBI GATNNNNATC 2 cut(s) 501, 684
BsaI GGTCTC 1 cut(s) 453
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 59, 89, 631, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 526
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 3 cut(s) 118, 570, 700
Bse8I GATNNNNATC 2 cut(s) 501, 684
BseGI GGATG 2 cut(s) 109, 424
BseJI GATNNNNATC 2 cut(s) 501, 684
BseLI CCNNNNNNNGG 2 cut(s) 124, 526
BseMI GCAATG 3 cut(s) 118, 570, 700
BseMII CTCAG 3 cut(s) 251, 322, 576
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 3 cut(s) 47, 80, 94
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 2 cut(s) 264, 644
Bsh1236I CGCG 2 cut(s) 188, 574
BsiHKAI GWGCWC 3 cut(s) 223, 294, 616
BsiSI CCGG 3 cut(s) 5, 274, 329
BslI CCNNNNNNNGG 2 cut(s) 124, 526
BsmAI GTCTC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 223, 294, 616
Bsp143I GATC 2 cut(s) 156, 682
BspACI CCGC 2 cut(s) 188, 574
BspCNI CTCAG 3 cut(s) 250, 321, 577
BspFNI CGCG 2 cut(s) 188, 574
BspTNI GGTCTC 1 cut(s) 453
BsrDI GCAATG 3 cut(s) 118, 570, 700
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 2 cut(s) 156, 682
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 3 cut(s) 209, 543, 552
BstDEI CTNAG 3 cut(s) 237, 308, 585
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 109, 424
BstFNI CGCG 2 cut(s) 188, 574
BstKTI GATC 2 cut(s) 159, 685
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 156, 682
BstMWI GCNNNNNNNGC 3 cut(s) 227, 374, 580
BstSCI CCNGG 2 cut(s) 4, 328
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 2 cut(s) 188, 574
BstV1I GCAGC 2 cut(s) 264, 644
BstV2I GAAGAC 1 cut(s) 152
BsuI GTATCC 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 109, 424
BtsIMutI CAGTG 3 cut(s) 614, 695, 730
Cfr10I RCCGGY 1 cut(s) 273
Csp6I GTAC 1 cut(s) 37
CviJI RGCY 8 cut(s) 175, 221, 230, 277, 307, 377, 583, 635
CviKI_1 RGCY 8 cut(s) 175, 221, 230, 277, 307, 377, 583, 635
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 237, 308, 585
DpnI GATC 2 cut(s) 158, 684
DpnII GATC 2 cut(s) 156, 682
Eam1104I CTCTTC 3 cut(s) 209, 543, 552
EarI CTCTTC 3 cut(s) 209, 543, 552
Ecl136II GAGCTC 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 453
Eco32I GATATC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoRV GATATC 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 223
FaiI YATR 2 cut(s) 225, 660
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 278, 633
FokI GGATG 2 cut(s) 116, 431
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 278, 633
FspBI CTAG 2 cut(s) 369, 739
GluI GCNGC 2 cut(s) 278, 633
HapII CCGG 3 cut(s) 5, 274, 329
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 1 cut(s) 431
HpaII CCGG 3 cut(s) 5, 274, 329
HphI GGTGA 4 cut(s) 122, 173, 356, 449
Hpy166II GTNNAC 3 cut(s) 181, 598, 614
Hpy188I TCNGA 2 cut(s) 477, 538
Hpy8I GTNNAC 3 cut(s) 181, 598, 614
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4V TGCA 4 cut(s) 500, 510, 614, 693
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 374, 580
HpyF3I CTNAG 3 cut(s) 237, 308, 585
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 2 cut(s) 156, 682
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 2 cut(s) 264, 644
LweI GCATC 3 cut(s) 458, 487, 634
MaeI CTAG 2 cut(s) 369, 739
MaeIII GTNAC 1 cut(s) 734
MalI GATC 2 cut(s) 158, 684
MboI GATC 2 cut(s) 156, 682
MboII GAAGA 8 cut(s) 157, 163, 166, 220, 223, 226, 560, 569
MhlI GDGCHC 3 cut(s) 223, 294, 616
MluCI AATT 2 cut(s) 52, 97
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 8 cut(s) 25, 58, 72, 85, 346, 367, 553, 664
MseI TTAA 3 cut(s) 393, 522, 590
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 3 cut(s) 5, 274, 329
MspR9I CCNGG 2 cut(s) 6, 330
MvnI CGCG 2 cut(s) 188, 574
MwoI GCNNNNNNNGC 3 cut(s) 227, 374, 580
NciI CCSGG 2 cut(s) 6, 330
NdeII GATC 2 cut(s) 156, 682
NmeAIII GCCGAG 1 cut(s) 454
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 2 cut(s) 279, 634
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 393, 522, 590
SatI GCNGC 2 cut(s) 278, 633
Sau3AI GATC 2 cut(s) 156, 682
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 6, 330
SduI GDGCHC 3 cut(s) 223, 294, 616
SetI ASST 7 cut(s) 223, 243, 357, 439, 465, 637, 723
SfaNI GCATC 3 cut(s) 458, 487, 634
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 2 cut(s) 52, 97
SsiI CCGC 2 cut(s) 188, 574
SspMI CTAG 2 cut(s) 369, 739
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 4, 328
TaaI ACNGT 1 cut(s) 734
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 52, 97
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 3 cut(s) 393, 522, 590
Tru9I TTAA 3 cut(s) 393, 522, 590
TscAI CASTG 3 cut(s) 621, 695, 737
TseI GCWGC 2 cut(s) 277, 632
TspDTI ATGAA 2 cut(s) 351, 426
TspRI CASTG 3 cut(s) 621, 695, 737
Van91I CCANNNNNTGG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 612
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 1 cut(s) 52
XspI CTAG 2 cut(s) 369, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.