Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002294.1

Orthogroup ID

OG0000926

Physical Location & Seq

Genomic Coordinates Reverse (-)

135862 .. 137438

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002294.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggatccctattatgaacaaagactcagagacgaagtcatttacctccactctctctggcaccaaggtccccctaatcgtcaaaaccccattcccattccctttcccaattccacaatccgagccaccccaaatggcggaaacccccaattgccgcacccgatcgccgcccaagaaggccccaccaccaagaggaaaacaagaaccgaaattgaattgcccagcagcaacaagaagccctcccaacccaacccgcgttgggaatgcccgagtccggccttgaacgatgactcaacctctgagtggccctcgtctaggtggacagtgacttcagccaagctcaatttggctccggcgttggcggaagagcagttgaggcaccacccgcttcgactacacaacaaggccttggaggcctgcaacggattctttaagggcaatgccgggtcgggtagtgggtccgagagtgaggaggaagaagaggattgcaaggttggagatgaggagaatgaggagtacaagttgttgttgaatttgtttgtggaggagagtgggttgaggagttattacgaggggaattgggatagtggtgatttctattgcttggtgtgtggtggattggggaagacgaagaagatcaagggttgtaccgggcttgttcagcacgcggtttcgataatcaagatgaagaagaagagagctcacagggcttttgatcaggaggattcgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.41

Weight (kDa)

6.26

Isoelectric Point (pI)

70.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78810 AT1G78810 AT1G78810
fragaria_vesca	FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260
malus_domestica	MD11G1264000.v1.1
prunus_persica	Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1
pyrus_communis	pycom11g23250
rosa_chinensis	RchiOBHm_Chr1g0314351 RchiOBHm_Chr1g0357411 RchiOBHm_Chr5g0030881 RchiOBHm_Chr5g0030891 RchiOBHm_Chr7g0196621
rosa_laevigata	RLG00000007052 RLG00000008751 RLG00000033260 RLG00000033263
rosa_multiflora	Rmu_co8438113.1_g000001 Rmu_co8456075.1_g000001 Rmu_sc0001974.1_g000027 Rmu_sc0001974.1_g000028 Rmu_sc0002294.1_g000038
rosa_roxburghii	Rroxscaffold_1G00049380
rosa_rugosa	Rorug01G0364900 Rorug05G0121100 Rorug05G0121200 Rorug05G0121200 Rorug05G0121200 Rorug05G0121300 Rorug05G0121400
rosa_samantha	Rh1AG010400 Rh1AG270600 Rh2CG352200 Rh3CG359400 Rh4AG035000 Rh4BG053800 Rh4CG032500 Rh4DG105900 Rh5AG214200 Rh5AG214300 Rh5AG214400 Rh5BG213400 Rh5CG237200 Rh5CG237300 Rh5CG377800 Rh5DG217800 Rh7DG204700 Rh7DG406500
rosa_wichuraiana	Rw5G019580 Rw5G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	60, 378
AccII	CGCG	2 cut(s)	256, 668
AciI	CCGC	7 cut(s)	138, 155, 168, 254, 362, 386, 668
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	518, 649
AfiI	CCNNNNNNNGG	6 cut(s)	137, 192, 259, 274, 303, 315
AgsI	TTSAA	3 cut(s)	215, 283, 532
AluBI	AGCT	2 cut(s)	340, 701
AluI	AGCT	2 cut(s)	340, 701
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	5 cut(s)	178, 276, 305, 405, 414
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	68, 179, 306, 459
AsuC2I	CCSGG	2 cut(s)	445, 652
AsuHPI	GGTGA	1 cut(s)	602
AsuII	TTCGAA	1 cut(s)	728
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	68, 459
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	60, 378
BanII	GRGCYC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	445, 652
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	315
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	155, 168, 226
BlsI	GCNGC	3 cut(s)	156, 169, 227
Bme1390I	CCNGG	2 cut(s)	445, 652
Bme18I	GGWCC	2 cut(s)	68, 459
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	4 cut(s)	68, 179, 306, 459
BmiI	GGNNCC	7 cut(s)	6, 62, 70, 181, 351, 380, 460
BmrFI	CCNGG	2 cut(s)	445, 652
BpiI	GAAGAC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu14I	TTCGAA	1 cut(s)	728
BpuMI	CCSGG	2 cut(s)	445, 652
BsaJI	CCNNGG	2 cut(s)	64, 408
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 536, 539, 569
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 192, 259, 274, 303, 315
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	64, 408
BseLI	CCNNNNNNNGG	6 cut(s)	137, 192, 259, 274, 303, 315
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	40, 291
BseRI	GAGGAG	5 cut(s)	485, 518, 527, 560, 574
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	2 cut(s)	256, 668
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	180, 278, 307, 407, 416
BshNI	GGYRCC	2 cut(s)	60, 378
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	4 cut(s)	275, 353, 444, 651
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	6 cut(s)	137, 192, 259, 274, 303, 315
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	5 cut(s)	180, 278, 307, 407, 416
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	4 cut(s)	4, 162, 636, 715
BspACI	CCGC	7 cut(s)	138, 155, 168, 254, 362, 386, 668
BspANI	GGCC	5 cut(s)	180, 278, 307, 407, 416
BspCNI	CTCAG	2 cut(s)	39, 292
BspFNI	CGCG	2 cut(s)	256, 668
BspLI	GGNNCC	7 cut(s)	6, 62, 70, 181, 351, 380, 460
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	728
BspT107I	GGYRCC	2 cut(s)	60, 378
BsrDI	GCAATG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	64, 408
BssMI	GATC	4 cut(s)	4, 162, 636, 715
BssT1I	CCWWGG	2 cut(s)	64, 408
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	3 cut(s)	360, 474, 689
BstBI	TTCGAA	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	418, 666
BstDEI	CTNAG	2 cut(s)	26, 300
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	256, 668
BstKTI	GATC	4 cut(s)	7, 165, 639, 718
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	4 cut(s)	4, 162, 636, 715
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 385, 413, 661, 707
BstSCI	CCNGG	2 cut(s)	443, 650
BstUI	CGCG	2 cut(s)	256, 668
BstV1I	GCAGC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	5 cut(s)	180, 278, 307, 407, 416
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	418, 666
Cfr13I	GGNCC	4 cut(s)	68, 179, 306, 459
Csp6I	GTAC	2 cut(s)	517, 648
CviQI	GTAC	2 cut(s)	517, 648
DdeI	CTNAG	2 cut(s)	26, 300
DpnI	GATC	4 cut(s)	6, 164, 638, 717
DpnII	GATC	4 cut(s)	4, 162, 636, 715
Eam1104I	CTCTTC	3 cut(s)	360, 474, 689
EarI	CTCTTC	3 cut(s)	360, 474, 689
EciI	GGCGGA	2 cut(s)	153, 377
Ecl136II	GAGCTC	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	64, 408
Eco147I	AGGCCT	2 cut(s)	407, 416
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	68, 459
Eco53kI	GAGCTC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoO109I	RGGNCCY	2 cut(s)	68, 179
EcoT14I	CCWWGG	2 cut(s)	64, 408
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	2 cut(s)	64, 408
Esp3I	CGTCTC	1 cut(s)	24
FaiI	YATR	1 cut(s)	15
FaqI	GGGAC	1 cut(s)	54
FauI	CCCGC	2 cut(s)	261, 393
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	155, 168, 226
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	3 cut(s)	155, 168, 226
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	155, 168, 226
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	180, 278, 307, 407, 416
HapII	CCGG	4 cut(s)	275, 353, 444, 651
HinfI	GANTC	5 cut(s)	24, 271, 290, 426, 725
HpaII	CCGG	4 cut(s)	275, 353, 444, 651
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	4 cut(s)	29, 122, 301, 463
Hpy188III	TCNNGA	2 cut(s)	682, 719
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	420, 489
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 385, 413, 661, 707
HpyF3I	CTNAG	2 cut(s)	26, 300
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	4, 162, 636, 715
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	9 cut(s)	43, 235, 288, 366, 430, 457, 664, 691, 704
Lsp1109I	GCAGC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	6, 164, 638, 717
MboI	GATC	4 cut(s)	4, 162, 636, 715
MboII	GAAGA	9 cut(s)	377, 488, 491, 637, 643, 646, 700, 703, 706
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	7 cut(s)	109, 149, 210, 215, 343, 532, 577
MlyI	GAGTC	3 cut(s)	18, 280, 284
MmeI	TCCRAC	1 cut(s)	475
MseI	TTAA	1 cut(s)	432
MspI	CCGG	4 cut(s)	275, 353, 444, 651
MspR9I	CCNGG	2 cut(s)	445, 652
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	269
MvnI	CGCG	2 cut(s)	256, 668
MwoI	GCNNNNNNNGC	5 cut(s)	376, 385, 413, 661, 707
NciI	CCSGG	2 cut(s)	445, 652
NdeII	GATC	4 cut(s)	4, 162, 636, 715
NlaIV	GGNNCC	7 cut(s)	6, 62, 70, 181, 351, 380, 460
NmuCI	GTSAC	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	728
PceI	AGGCCT	2 cut(s)	407, 416
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	426, 725
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	156, 169, 227
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	3 cut(s)	18, 279, 284
PpsI	GAGTC	3 cut(s)	18, 279, 284
PpuMI	RGGWCCY	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	7 cut(s)	6, 62, 70, 181, 351, 380, 460
PspPI	GGNCC	4 cut(s)	68, 179, 306, 459
PspPPI	RGGWCCY	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	518, 649
RsaNI	GTAC	2 cut(s)	517, 648
SacI	GAGCTC	1 cut(s)	703
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	155, 168, 226
Sau3AI	GATC	4 cut(s)	4, 162, 636, 715
Sau96I	GGNCC	4 cut(s)	68, 179, 306, 459
SchI	GAGTC	3 cut(s)	18, 280, 284
ScrFI	CCNGG	2 cut(s)	445, 652
SduI	GDGCHC	1 cut(s)	703
SetI	ASST	7 cut(s)	48, 70, 299, 320, 342, 495, 703
SfiI	GGCCNNNNNGGCC	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	728
SinI	GGWCC	2 cut(s)	68, 459
Sse9I	AATT	7 cut(s)	109, 149, 210, 215, 343, 532, 577
SseBI	AGGCCT	2 cut(s)	407, 416
SsiI	CCGC	7 cut(s)	138, 155, 168, 254, 362, 386, 668
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	703
StuI	AGGCCT	2 cut(s)	407, 416
StyD4I	CCNGG	2 cut(s)	443, 650
StyI	CCWWGG	2 cut(s)	64, 408
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	391, 674, 728
TasI	AATT	7 cut(s)	109, 149, 210, 215, 343, 532, 577
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	2 cut(s)	157, 170
TfiI	GAWTC	2 cut(s)	426, 725
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	30, 701
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	68, 459
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.