Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000926

Physical Location & Seq

Genomic Coordinates Forward (+)

47987681 .. 47988813

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATCAGCATATGTATTCAGAAAAGCCAGCAGTGTTTACCCCCAGATTTCTAAAGATTTCTGCTATTGGGCTGAGGATCCTCACCACCATTTTCCTCTTTCTGTCACTCATCATCCTCATCACCAAAGTTACTACAGACGTGGTGGAAGTTACTGCAGACGGGGAGGCCAAGGATGACACACTTCACTTTTATGACCTTGTTGGATACCGATACATGACTGCCACAATTATTCTTGGATGTGCATATTCAATCTGGCAAACCGTGACAACAGTTATCCGCCTCAAGAAAGGATATGAGGCGAACCTTGTACTTGAATACTATGGGGATAAGGTTATGTCGATAGCATTAGCCACAGGATCGGTTGCAGGATTTATTATGACTGGAGAATTACAAAGAGTAATAGTTAGCAAAGGACATGGTGATTACATCCACAGGTATTTCAAAATGGGATATGCAGCAGATGGTTTCGTCTTCCTTGGATTCATTTGCGCTCTTATATTATCGGAACTCTCTTCATATGCACTCCCTAAGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.18

Weight (kDa)

7.74

Isoelectric Point (pI)

22.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	18 - 164	9.9e-14	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78810 AT1G78810 AT1G78810
fragaria_vesca	FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260
malus_domestica	MD11G1264000.v1.1
prunus_persica	Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1
pyrus_communis	pycom11g23250
rosa_chinensis	RchiOBHm_Chr1g0314351 RchiOBHm_Chr1g0357411 RchiOBHm_Chr5g0030881 RchiOBHm_Chr5g0030891 RchiOBHm_Chr7g0196621
rosa_laevigata	RLG00000007052 RLG00000008751 RLG00000033260 RLG00000033263
rosa_multiflora	Rmu_co8438113.1_g000001 Rmu_co8456075.1_g000001 Rmu_sc0001974.1_g000027 Rmu_sc0001974.1_g000028 Rmu_sc0002294.1_g000038
rosa_roxburghii	Rroxscaffold_1G00049380
rosa_rugosa	Rorug01G0364900 Rorug05G0121100 Rorug05G0121200 Rorug05G0121200 Rorug05G0121200 Rorug05G0121300 Rorug05G0121400
rosa_samantha	Rh1AG010400 Rh1AG270600 Rh2CG352200 Rh3CG359400 Rh4AG035000 Rh4BG053800 Rh4CG032500 Rh4DG105900 Rh5AG214200 Rh5AG214300 Rh5AG214400 Rh5BG213400 Rh5CG237200 Rh5CG237300 Rh5CG377800 Rh5DG217800 Rh7DG204700 Rh7DG406500
rosa_wichuraiana	Rw5G019580 Rw5G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	4 cut(s)	12, 73, 86, 367
AfaI	GTAC	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	252, 317, 445
AjiI	CACGTC	1 cut(s)	142
AlwI	GGATC	4 cut(s)	12, 73, 86, 367
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	494
AsuHPI	GGTGA	3 cut(s)	76, 115, 434
BamHI	GGATCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	1 cut(s)	458
BciVI	GTATCC	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	135, 156
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	171, 478
Bse1I	ACTGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	171, 478
BseGI	GGATG	4 cut(s)	114, 181, 245, 429
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	470
BshFI	GGCC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	4, 78, 359
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	4 cut(s)	12, 73, 86, 367
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	171, 478
BssMI	GATC	3 cut(s)	4, 78, 359
BssT1I	CCWWGG	2 cut(s)	171, 478
Bst4CI	ACNGT	2 cut(s)	265, 274
Bst6I	CTCTTC	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	74, 531
BstF5I	GGATG	4 cut(s)	114, 181, 245, 429
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	3 cut(s)	7, 81, 362
BstMBI	GATC	3 cut(s)	4, 78, 359
BstSFI	CTRYAG	2 cut(s)	135, 156
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	170
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	4 cut(s)	114, 181, 245, 429
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	217, 419
CviJI	RGCY	4 cut(s)	28, 73, 170, 353
CviKI_1	RGCY	4 cut(s)	28, 73, 170, 353
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	74, 531
DpnI	GATC	3 cut(s)	6, 80, 361
DpnII	GATC	3 cut(s)	4, 78, 359
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	171, 478
EcoT14I	CCWWGG	2 cut(s)	171, 478
ErhI	CCWWGG	2 cut(s)	171, 478
FaeI	CATG	2 cut(s)	220, 422
FatI	CATG	2 cut(s)	216, 418
FauNDI	CATATG	2 cut(s)	12, 520
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	4 cut(s)	101, 188, 252, 416
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	2 cut(s)	220, 422
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	1 cut(s)	483
HphI	GGTGA	3 cut(s)	76, 115, 434
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	22, 508
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	39
HpyCH4III	ACNGT	2 cut(s)	265, 274
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	158, 245, 368, 458, 524
HpyF3I	CTNAG	2 cut(s)	74, 531
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	220, 422
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	4, 78, 359
LpnPI	CCDG	7 cut(s)	42, 58, 241, 342, 354, 369, 421
Lsp1109I	GCAGC	1 cut(s)	470
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	4 cut(s)	105, 130, 151, 265
MalI	GATC	3 cut(s)	6, 80, 361
MboI	GATC	3 cut(s)	4, 78, 359
MboII	GAAGA	2 cut(s)	466, 507
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	2 cut(s)	228, 389
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	69, 92, 107, 128, 160, 292, 293
MslI	CAYNNNNRTG	1 cut(s)	192
NdeI	CATATG	2 cut(s)	12, 520
NdeII	GATC	3 cut(s)	4, 78, 359
NlaIII	CATG	2 cut(s)	220, 422
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	105, 265
PfeI	GAWTC	1 cut(s)	483
PkrI	GCNGC	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	192
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	4, 78, 359
SetI	ASST	5 cut(s)	144, 201, 309, 336, 440
SfcI	CTRYAG	2 cut(s)	135, 156
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	228, 389
SsiI	CCGC	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	171, 478
TaaI	ACNGT	2 cut(s)	265, 274
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	228, 389
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	483
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	105, 265
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	105, 265
TspDTI	ATGAA	2 cut(s)	475, 507
TspRI	CASTG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.