Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000926

Physical Location & Seq

Genomic Coordinates Reverse (-)

16342920 .. 16346137

Gene Structure 3218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAATCCTATGATGAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGTGTCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTGCTGGTTTGACTCTGCCTTCTCCTGCGCCAGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAACTTCTACAACTGCCTGCGGCTCATCAGCAGATGAGCATTTCTCTCTCTGAAATTTCTGGATATATAGTAAGGAGCTTAGACCTGATTGATGTTATAAATTTTGTTGCATTTTTACTCTCTTCCAAACTGCCTCAACCAGAAAAGGTCCTGGTTGTTGAAAGAGTTATTGAATCCTTGGGCTTGCAGGCGGTGCGGGATTCCCTGGTTGGAACGGTAGAGAAGCGAGGAATCTCTGGAGGTCAAAGAAAAAGAGTAAATGTTGGGCTGGAAATGGTCATGGAGCCATCACTTCTAATTTTAGATGAACCCACATCTGGTTTGGATAGTTCATCTTCTAATCTGCTACTTAGAGCTCTTAGACGTGAGGCTCTTGAAGGAGTTAACATTTGCATGGTTGTCCACCAGCCCAGTGCTCAGACCTTAAATGTTGACCAGTTGGATAGTGCACTAAAAGACAATGCGACAGCTGAAACTGATGCTCCTGCTGAATATAGTGAAAAAGAGGCATTTGATGATTATCAGTGCAATGGTAAAGAACTAATCATCTGTCAGAGCTCTTTGAAAGATGACTGTACAGATAAAAGCATAGAAAGCCTTGATGAGGGAAAGACAGTATTAATGAATGAAGCAATTGGAGAAGAAGCAAAGGATGCATTGGTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

292

Amino Acids

32.0

Weight (kDa)

4.55

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	122 - 176	1.1e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78810 AT1G78810 AT1G78810
fragaria_vesca	FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260
malus_domestica	MD11G1264000.v1.1
prunus_persica	Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1
pyrus_communis	pycom11g23250
rosa_chinensis	RchiOBHm_Chr1g0314351 RchiOBHm_Chr1g0357411 RchiOBHm_Chr5g0030881 RchiOBHm_Chr5g0030891 RchiOBHm_Chr7g0196621
rosa_laevigata	RLG00000007052 RLG00000008751 RLG00000033260 RLG00000033263
rosa_multiflora	Rmu_co8438113.1_g000001 Rmu_co8456075.1_g000001 Rmu_sc0001974.1_g000027 Rmu_sc0001974.1_g000028 Rmu_sc0002294.1_g000038
rosa_roxburghii	Rroxscaffold_1G00049380
rosa_rugosa	Rorug01G0364900 Rorug05G0121100 Rorug05G0121200 Rorug05G0121200 Rorug05G0121200 Rorug05G0121300 Rorug05G0121400
rosa_samantha	Rh1AG010400 Rh1AG270600 Rh2CG352200 Rh3CG359400 Rh4AG035000 Rh4BG053800 Rh4CG032500 Rh4DG105900 Rh5AG214200 Rh5AG214300 Rh5AG214400 Rh5BG213400 Rh5CG237200 Rh5CG237300 Rh5CG377800 Rh5DG217800 Rh7DG204700 Rh7DG406500
rosa_wichuraiana	Rw5G019580 Rw5G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	3 cut(s)	230, 401, 406
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	3 cut(s)	193, 264, 310
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	787
AfiI	CCNNNNNNNGG	2 cut(s)	527, 814
AgsI	TTSAA	5 cut(s)	131, 371, 383, 587, 775
AjiI	CACGTC	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	360, 414
AluBI	AGCT	6 cut(s)	53, 206, 288, 566, 680, 768
AluI	AGCT	6 cut(s)	53, 206, 288, 566, 680, 768
Alw21I	GWGCWC	4 cut(s)	568, 628, 661, 770
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	206
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	3 cut(s)	193, 264, 310
AseI	ATTAAT	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	59, 167
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	661
BanII	GRGCYC	2 cut(s)	568, 770
BauI	CACGAG	1 cut(s)	54
Bbv12I	GWGCWC	4 cut(s)	568, 628, 661, 770
BccI	CCATC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	362, 416
BfmI	CTRYAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	362, 416
Bme18I	GGWCC	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	2 cut(s)	362, 416
BmrI	ACTGGG	2 cut(s)	175, 615
BmsI	GCATC	2 cut(s)	679, 853
BmuI	ACTGGG	2 cut(s)	175, 615
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	387, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 814
Bse1I	ACTGG	4 cut(s)	125, 181, 621, 646
Bse3DI	GCAATG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	362, 416
BseDI	CCNNGG	2 cut(s)	387, 414
BseGI	GGATG	2 cut(s)	169, 868
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	2 cut(s)	527, 814
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	2 cut(s)	21, 641
BseNI	ACTGG	4 cut(s)	125, 181, 621, 646
BseSI	GKGCMC	1 cut(s)	661
BsiHKAI	GWGCWC	4 cut(s)	568, 628, 661, 770
BslI	CCNNNNNNNGG	2 cut(s)	527, 814
Bsp1286I	GDGCHC	4 cut(s)	568, 628, 661, 770
Bsp1407I	TGTACA	1 cut(s)	785
Bsp143I	GATC	2 cut(s)	133, 166
BspACI	CCGC	3 cut(s)	230, 401, 406
BspCNI	CTCAG	2 cut(s)	22, 640
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	495
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	785
BsrI	ACTGG	4 cut(s)	125, 181, 621, 646
BssECI	CCNNGG	2 cut(s)	387, 414
BssMI	GATC	2 cut(s)	133, 166
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	362, 416
Bst4CI	ACNGT	3 cut(s)	427, 785, 826
Bst6I	CTCTTC	1 cut(s)	337
BstAPI	GCANNNNNTGC	2 cut(s)	403, 863
BstAUI	TGTACA	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	228, 395, 399
BstDEI	CTNAG	5 cut(s)	30, 289, 560, 569, 627
BstENI	CCTNNNNNAGG	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	169, 868
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	2 cut(s)	136, 169
BstMBI	GATC	2 cut(s)	133, 166
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 804, 863
BstNI	CCWGG	2 cut(s)	362, 416
BstSCI	CCNGG	2 cut(s)	360, 414
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	661
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	169, 868
BtsIMutI	CAGTG	3 cut(s)	188, 628, 740
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	228, 395, 399
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	786
CviAII	CATG	3 cut(s)	190, 490, 604
CviQI	GTAC	1 cut(s)	786
DdeI	CTNAG	5 cut(s)	30, 289, 560, 569, 627
DpnI	GATC	2 cut(s)	135, 168
DpnII	GATC	2 cut(s)	133, 166
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Ecl136II	GAGCTC	2 cut(s)	566, 768
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	568, 770
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	2 cut(s)	566, 768
Eco57I	CTGAAG	1 cut(s)	21
EcoICRI	GAGCTC	2 cut(s)	566, 768
EcoNI	CCTNNNNNAGG	1 cut(s)	812
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	360, 414
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	868
EcoT38I	GRGCYC	2 cut(s)	568, 770
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	193, 493, 607
FatI	CATG	3 cut(s)	189, 489, 603
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	2 cut(s)	156, 875
FriOI	GRGCYC	2 cut(s)	568, 770
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	193, 493, 607
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	595, 643
HindII	GTYRAC	2 cut(s)	595, 643
HinfI	GANTC	6 cut(s)	5, 64, 106, 383, 410, 441
HpaI	GTTAAC	1 cut(s)	595
HphI	GGTGA	2 cut(s)	59, 167
Hpy166II	GTNNAC	4 cut(s)	595, 613, 643, 659
Hpy188I	TCNGA	5 cut(s)	40, 202, 262, 630, 765
Hpy188III	TCNNGA	5 cut(s)	61, 190, 270, 447, 584
Hpy8I	GTNNAC	4 cut(s)	595, 613, 643, 659
HpyAV	CCTTC	3 cut(s)	45, 123, 581
HpyCH4III	ACNGT	3 cut(s)	427, 785, 826
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	6 cut(s)	320, 397, 603, 659, 738, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 804, 863
HpyF3I	CTNAG	5 cut(s)	30, 289, 560, 569, 627
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	3 cut(s)	193, 493, 607
HspAI	GCGC	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	133, 166
LmnI	GCTCC	3 cut(s)	285, 493, 697
LweI	GCATC	2 cut(s)	679, 853
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	135, 168
MboI	GATC	2 cut(s)	133, 166
MboII	GAAGA	4 cut(s)	143, 324, 537, 863
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	4 cut(s)	568, 628, 661, 770
MluCI	AATT	5 cut(s)	193, 264, 310, 507, 843
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	400, 630
MnlI	CCTC	8 cut(s)	91, 146, 354, 431, 443, 571, 709, 808
Mph1103I	ATGCAT	1 cut(s)	868
MseI	TTAA	3 cut(s)	594, 635, 830
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	680
MspR9I	CCNGG	2 cut(s)	362, 416
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	2 cut(s)	362, 416
MwoI	GCNNNNNNNGC	3 cut(s)	403, 804, 863
NdeII	GATC	2 cut(s)	133, 166
NlaIII	CATG	3 cut(s)	193, 493, 607
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	868
PagI	TCATGA	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	5, 64, 383, 410, 441
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	1 cut(s)	308
Psp124BI	GAGCTC	2 cut(s)	568, 770
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	360, 414
PspGI	CCWGG	2 cut(s)	360, 414
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	787
RsaNI	GTAC	1 cut(s)	786
RseI	CAYNNNNRTG	1 cut(s)	602
SacI	GAGCTC	2 cut(s)	568, 770
SaqAI	TTAA	3 cut(s)	594, 635, 830
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	133, 166
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	362, 416
SduI	GDGCHC	4 cut(s)	568, 628, 661, 770
SfaNI	GCATC	2 cut(s)	679, 853
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	193, 264, 310, 507, 843
SsiI	CCGC	3 cut(s)	230, 401, 406
SstI	GAGCTC	2 cut(s)	568, 770
StyD4I	CCNGG	2 cut(s)	360, 414
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	427, 785, 826
TaiI	ACGT	1 cut(s)	577
TasI	AATT	5 cut(s)	193, 264, 310, 507, 843
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	5 cut(s)	5, 64, 383, 410, 441
Tru1I	TTAA	3 cut(s)	594, 635, 830
Tru9I	TTAA	3 cut(s)	594, 635, 830
TscAI	CASTG	3 cut(s)	188, 628, 740
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	7 cut(s)	178, 206, 225, 531, 531, 848, 852
TspRI	CASTG	3 cut(s)	188, 628, 740
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	812
XapI	RAATTY	3 cut(s)	193, 264, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.