RchiOBHm_Chr7g0196621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000926
Physical Location & Seq
Reverse (-)
14603756 .. 14604592
837 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17589

Sequence Viewer

Length: 837 bp
ATGGATCCCTATTATGAACAAAGACTCAGAGACGAAGTCATTTACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAATCGCCGAAACCCCATTCCCATTCCCTTTCCCAATTCCACAATCCGAGCCACCCCAAATGGCGGAAACCCCCAATTGCCGTACCCGATCGCCTCCCAAGAAGGCCCCACCACCAAGAGGAAAACAAGAACCGAAATTGAATTGCCCAGCAGCAACAAGAAGCCCTCCCAACCTGACCTGCGTTCGGAATGGCCGGGTCCGGCCTTGAACGATGACTCAACCTCTGAGTGGCCCTCGTCTGGGTGGACAGTGACTTCAGCCAAGCTCAATTTGGCTCCGGCGTCGGCAGAAGAGCAGTTGAGGCACCACGCGCTTCGGCTACACAACAAGGCCTTGGAGGCCTGCAGCGGATTCTTTAAGGGCAATGTCGGGTCGGGTAGTGGGTCCGAGTGTGAGGAGGAAGAAGAGGATTGCAAGGTTGGAGATGAGGAGAATGAGGAGTACAAGTTGTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATAGTGGTGATTTCTATTGCTTGGTGTGTGGTGGGTTGGGGAAGACGAAGAAGATCAAGGGTTGTACCGGGCTTGTTCAGCACGCGGTTTCGATAAGCAAGACGAAGAAGAAGAGAGCTCACAGGGCTTTTGCTCAGGTTGTGTGTAGGGTTTTAGGGTGGGTGGGATTTTGGCCGGAAAAAAAAAAACACAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAATTTAAAAAAAAAAAAAGGAAGTGAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.37

Weight (kDa)

8.83

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 60, 378
AccII CGCG 2 cut(s) 386, 668
AciI CCGC 3 cut(s) 138, 423, 668
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 266, 755
AcsI RAATTY 2 cut(s) 532, 805
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 3 cut(s) 158, 518, 649
AfiI CCNNNNNNNGG 6 cut(s) 137, 192, 259, 303, 314, 315
AgsI TTSAA 3 cut(s) 215, 283, 532
AluBI AGCT 2 cut(s) 340, 701
AluI AGCT 2 cut(s) 340, 701
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 12
AoxI GGCC 7 cut(s) 178, 266, 276, 305, 405, 414, 755
ApeKI GCWGC 2 cut(s) 225, 420
ApoI RAATTY 2 cut(s) 532, 805
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 5 cut(s) 68, 179, 272, 306, 459
AsuC2I CCSGG 2 cut(s) 270, 652
AsuHPI GGTGA 1 cut(s) 602
AvaII GGWCC 3 cut(s) 68, 272, 459
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 60, 378
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 2 cut(s) 237, 432
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 2 cut(s) 270, 652
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 2 cut(s) 226, 421
BlsI GCNGC 2 cut(s) 227, 422
Bme1390I CCNGG 2 cut(s) 270, 652
Bme18I GGWCC 3 cut(s) 68, 272, 459
BmgT120I GGNCC 5 cut(s) 68, 179, 272, 306, 459
BmiI GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
BmrFI CCNGG 2 cut(s) 270, 652
BpiI GAAGAC 1 cut(s) 632
BplI GAGNNNNNCTC 2 cut(s) 293, 325
Bpu10I CCTNAGC 1 cut(s) 717
BpuMI CCSGG 2 cut(s) 270, 652
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 64, 408
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 539, 569
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 192, 259, 303, 314, 315
Bse3DI GCAATG 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 64, 408
BseLI CCNNNNNNNGG 6 cut(s) 137, 192, 259, 303, 314, 315
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 3 cut(s) 40, 291, 731
BseRI GAGGAG 5 cut(s) 485, 518, 527, 560, 574
BseXI GCAGC 2 cut(s) 237, 432
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 386, 668
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 7 cut(s) 180, 268, 278, 307, 407, 416, 757
BshNI GGYRCC 2 cut(s) 60, 378
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 703
BsiSI CCGG 5 cut(s) 269, 275, 353, 651, 758
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 6 cut(s) 137, 192, 259, 303, 314, 315
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 7 cut(s) 180, 268, 278, 307, 407, 416, 757
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 3 cut(s) 4, 162, 636
BspACI CCGC 3 cut(s) 138, 423, 668
BspANI GGCC 7 cut(s) 180, 268, 278, 307, 407, 416, 757
BspCNI CTCAG 3 cut(s) 39, 292, 730
BspFNI CGCG 2 cut(s) 386, 668
BspLI GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
BspMAI CTGCAG 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 60, 378
BsrDI GCAATG 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 64, 408
BssMI GATC 3 cut(s) 4, 162, 636
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 64, 408
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 3 cut(s) 360, 474, 689
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 418, 666
BstDEI CTNAG 3 cut(s) 26, 300, 717
BstFNI CGCG 2 cut(s) 386, 668
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 3 cut(s) 7, 165, 639
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 4, 162, 636
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 5 cut(s) 376, 385, 413, 661, 707
BstSCI CCNGG 2 cut(s) 268, 650
BstSFI CTRYAG 1 cut(s) 418
BstUI CGCG 2 cut(s) 386, 668
BstV1I GCAGC 2 cut(s) 237, 432
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 7 cut(s) 180, 268, 278, 307, 407, 416, 757
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 418, 666
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 5 cut(s) 68, 179, 272, 306, 459
CseI GACGC 1 cut(s) 345
Csp6I GTAC 3 cut(s) 157, 517, 648
CviQI GTAC 3 cut(s) 157, 517, 648
DdeI CTNAG 3 cut(s) 26, 300, 717
DpnI GATC 3 cut(s) 6, 164, 638
DpnII GATC 3 cut(s) 4, 162, 636
DraI TTTAAA 1 cut(s) 810
EaeI YGGCCR 2 cut(s) 266, 755
Eam1104I CTCTTC 3 cut(s) 360, 474, 689
EarI CTCTTC 3 cut(s) 360, 474, 689
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 64, 408
Eco147I AGGCCT 2 cut(s) 407, 416
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 3 cut(s) 68, 272, 459
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 68, 179
EcoT14I CCWWGG 2 cut(s) 64, 408
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 64, 408
Esp3I CGTCTC 1 cut(s) 24
FaiI YATR 1 cut(s) 15
FaqI GGGAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 226, 421
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 2 cut(s) 226, 421
GlaI GCGC 1 cut(s) 387
GluI GCNGC 2 cut(s) 226, 421
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 7 cut(s) 180, 268, 278, 307, 407, 416, 757
HapII CCGG 5 cut(s) 269, 275, 353, 651, 758
HgaI GACGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 356
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HinfI GANTC 3 cut(s) 24, 290, 426
HpaII CCGG 5 cut(s) 269, 275, 353, 651, 758
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 5 cut(s) 29, 122, 262, 301, 463
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 420, 489
HpyF10VI GCNNNNNNNGC 5 cut(s) 376, 385, 413, 661, 707
HpyF3I CTNAG 3 cut(s) 26, 300, 717
Hsp92I GRCGYC 1 cut(s) 356
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 3 cut(s) 4, 162, 636
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 237, 432
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 6, 164, 638
MboI GATC 3 cut(s) 4, 162, 636
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 8 cut(s) 109, 149, 210, 215, 343, 532, 577, 805
MlyI GAGTC 2 cut(s) 18, 284
MmeI TCCRAC 1 cut(s) 475
MseI TTAA 2 cut(s) 432, 809
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 5 cut(s) 269, 275, 353, 651, 758
MspR9I CCNGG 2 cut(s) 270, 652
MunI CAATTG 1 cut(s) 149
MvnI CGCG 2 cut(s) 386, 668
MwoI GCNNNNNNNGC 5 cut(s) 376, 385, 413, 661, 707
NciI CCSGG 2 cut(s) 270, 652
NdeII GATC 3 cut(s) 4, 162, 636
NlaIV GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
NmuCI GTSAC 1 cut(s) 325
PceI AGGCCT 2 cut(s) 407, 416
PciSI GCTCTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 426
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 227, 422
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 18, 284
PpsI GAGTC 2 cut(s) 18, 284
PpuMI RGGWCCY 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 703
Psp5II RGGWCCY 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
PspPI GGNCC 5 cut(s) 68, 179, 272, 306, 459
PspPPI RGGWCCY 1 cut(s) 68
PstI CTGCAG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 35
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 3 cut(s) 158, 518, 649
RsaNI GTAC 3 cut(s) 157, 517, 648
SacI GAGCTC 1 cut(s) 703
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 432, 809
SatI GCNGC 2 cut(s) 226, 421
Sau3AI GATC 3 cut(s) 4, 162, 636
Sau96I GGNCC 5 cut(s) 68, 179, 272, 306, 459
SchI GAGTC 2 cut(s) 18, 284
ScrFI CCNGG 2 cut(s) 270, 652
SduI GDGCHC 1 cut(s) 703
SetI ASST 9 cut(s) 48, 70, 250, 255, 299, 342, 495, 703, 723
SfcI CTRYAG 1 cut(s) 418
SfiI GGCCNNNNNGGCC 1 cut(s) 413
SinI GGWCC 3 cut(s) 68, 272, 459
Sse9I AATT 8 cut(s) 109, 149, 210, 215, 343, 532, 577, 805
SseBI AGGCCT 2 cut(s) 407, 416
SsiI CCGC 3 cut(s) 138, 423, 668
SstI GAGCTC 1 cut(s) 703
StuI AGGCCT 2 cut(s) 407, 416
StyD4I CCNGG 2 cut(s) 268, 650
StyI CCWWGG 2 cut(s) 64, 408
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 674
TasI AATT 8 cut(s) 109, 149, 210, 215, 343, 532, 577, 805
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 2 cut(s) 432, 809
Tru9I TTAA 2 cut(s) 432, 809
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 225, 420
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 3 cut(s) 68, 272, 459
XapI RAATTY 2 cut(s) 532, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.