Rorug05G0121300

Polynucleotide kinase 3 phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000926
Physical Location & Seq
Reverse (-)
10713862 .. 10715156
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0121300.1

Sequence Viewer

Length: 255 bp
ATGCCGGAGATGTTGAAGCTTCGGGACGCAGGGATCTACATCTGGCAACTTCACCAAGAAGGTAAAGCAAACTTCACCTCCGAATTTTTGGAAAACTTGACTGGAATTAAATGTTTATCTGAGGCCAAAGTCGATAAGATTTATAAAGCTGCTGAGAAGATAGTGATTAGTGCTCAAACTTGTCATAATCTGAAATCCATTGTCTTCATCAGTTCCAACTTCAATGGGGACACAAGAGGCATCCGTAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

8.86

Isoelectric Point (pI)

12.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 83
AgsI TTSAA 2 cut(s) 16, 223
AluBI AGCT 2 cut(s) 19, 149
AluI AGCT 2 cut(s) 19, 149
Alw21I GWGCWC 1 cut(s) 175
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 44, 67
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 38
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 38
BseMII CTCAG 2 cut(s) 111, 144
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 2 cut(s) 38, 242
BsmFI GGGAC 2 cut(s) 38, 242
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 33
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 112, 145
BspPI GGATC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 106
BssMI GATC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 120, 153
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 240
CseI GACGC 1 cut(s) 35
CviJI RGCY 3 cut(s) 19, 125, 149
CviKI_1 RGCY 3 cut(s) 19, 125, 149
DdeI CTNAG 2 cut(s) 120, 153
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
FaiI YATR 2 cut(s) 144, 186
FaqI GGGAC 2 cut(s) 38, 242
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 44, 67
Hpy188I TCNGA 3 cut(s) 82, 121, 192
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 120, 153
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 15, 18, 28, 87
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 249
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 169, 196
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 2 cut(s) 83, 105
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 88, 115, 230
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 5
NdeII GATC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 151
PsiI TTATAA 1 cut(s) 144
PsuI RGATCY 1 cut(s) 33
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 175
SetI ASST 4 cut(s) 21, 64, 80, 151
SfaNI GCATC 1 cut(s) 249
SgeI CNNG 9 cut(s) 17, 35, 42, 55, 68, 109, 114, 192, 246
Sse9I AATT 2 cut(s) 83, 105
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 83, 105
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 233
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.