Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000926

Physical Location & Seq

Genomic Coordinates Forward (+)

7529099 .. 7531191

Gene Structure 2093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG035000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCGAAAACCATGCACACAGAAGAGACATTCTGCTTATAAAAATACTATTGAATGTGTTACTAGAATTGTGTCAAGAACCATATCAACTAAGGGCATGTTGGAAATATACAGCTCTTTGTCTGAAGCTGACAAGAAGGAGTTTGAGACTGCATATAGTGCCTCCTATTATCCTTGCATGGACATCCTCTATGAATGCTATGAGGATGTTGCAAGCGGCAGTGAGATCCGTAGCATTGTTTTGGCTGGGCGGCGATTTTATGCTAATAATAAGAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATTCATGCTACAATGAGTGGCCATGATGTTTTCGTTTTAATGCCAATTGGAGGGGGTAAGAGCCTGACATATCAGGTACTTGAATCTTTTTCTCACGACTCTTTTGACTTGTTTCAGAGTGAGCCTGAGTTAAATGTTGACCAGTTGGATAGTGCACTGAAAGACAATGTGGCAGCTGAAACTGATGCTCCTGCTGAATATAGTGAAAAAGAGGCATTTGATGATCATCAGTGCAATGGTAAAGAACCAATCATCTGTCAGAGCTCTTTGAAAGATGACTGTACAGATAAAAGCATAGAAAGCCTTGATGAGGGAAAGACAGTATTAATGAAGGAAGCAATTGGAGAAGAAGCAAAGGATGCATTGGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

IlvC IlvN

Protein Analysis

230

Amino Acids

25.87

Weight (kDa)

5.0

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KARI_C	PF01450	11 - 96	8.6e-12	Ketol-acid reductoisomerase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78810 AT1G78810 AT1G78810
fragaria_vesca	FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260
malus_domestica	MD11G1264000.v1.1
prunus_persica	Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1
pyrus_communis	pycom11g23250
rosa_chinensis	RchiOBHm_Chr1g0314351 RchiOBHm_Chr1g0357411 RchiOBHm_Chr5g0030881 RchiOBHm_Chr5g0030891 RchiOBHm_Chr7g0196621
rosa_laevigata	RLG00000007052 RLG00000008751 RLG00000033260 RLG00000033263
rosa_multiflora	Rmu_co8438113.1_g000001 Rmu_co8456075.1_g000001 Rmu_sc0001974.1_g000027 Rmu_sc0001974.1_g000028 Rmu_sc0002294.1_g000038
rosa_roxburghii	Rroxscaffold_1G00049380
rosa_rugosa	Rorug01G0364900 Rorug05G0121100 Rorug05G0121200 Rorug05G0121200 Rorug05G0121200 Rorug05G0121300 Rorug05G0121400
rosa_samantha	Rh1AG010400 Rh1AG270600 Rh2CG352200 Rh3CG359400 Rh4AG035000 Rh4BG053800 Rh4CG032500 Rh4DG105900 Rh5AG214200 Rh5AG214300 Rh5AG214400 Rh5BG213400 Rh5CG237200 Rh5CG237300 Rh5CG377800 Rh5DG217800 Rh7DG204700 Rh7DG406500
rosa_wichuraiana	Rw5G019580 Rw5G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AciI	CCGC	3 cut(s)	216, 250, 298
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	396, 601
AfiI	CCNNNNNNNGG	3 cut(s)	313, 368, 628
AgsI	TTSAA	3 cut(s)	53, 401, 589
AluBI	AGCT	4 cut(s)	114, 128, 494, 582
AluI	AGCT	4 cut(s)	114, 128, 494, 582
Alw21I	GWGCWC	2 cut(s)	475, 584
Alw26I	GTCTC	2 cut(s)	19, 140
Alw44I	GTGCAC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	491
AseI	ATTAAT	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	584
Bbv12I	GWGCWC	2 cut(s)	475, 584
BbvI	GCAGC	1 cut(s)	503
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	19, 140
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	3 cut(s)	217, 251, 492
BlsI	GCNGC	3 cut(s)	218, 252, 493
BmsI	GCATC	2 cut(s)	493, 667
BsaBI	GATNNNNATC	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 368, 628
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	543
BseGI	GGATG	3 cut(s)	183, 211, 682
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	3 cut(s)	313, 368, 628
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	475, 584
BslI	CCNNNNNNNGG	3 cut(s)	313, 368, 628
BsmAI	GTCTC	2 cut(s)	19, 140
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	475, 584
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	2 cut(s)	225, 541
BspACI	CCGC	3 cut(s)	216, 250, 298
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	436
BspPI	GGATC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	559
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	460
BssMI	GATC	2 cut(s)	225, 541
Bst4CI	ACNGT	2 cut(s)	599, 640
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	158, 677
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	90, 444
BstEII	GGTNACC	1 cut(s)	284
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	183, 211, 682
BstKTI	GATC	2 cut(s)	228, 544
BstMAI	GTCTC	2 cut(s)	19, 140
BstMBI	GATC	2 cut(s)	225, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 618, 677
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	183, 211, 682
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	3 cut(s)	226, 473, 554
Cac8I	GCNNGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	395, 600
CviAII	CATG	5 cut(s)	12, 97, 178, 323, 341
CviJI	RGCY	9 cut(s)	114, 128, 245, 339, 381, 442, 494, 582, 621
CviKI_1	RGCY	9 cut(s)	114, 128, 245, 339, 381, 442, 494, 582, 621
CviQI	GTAC	2 cut(s)	395, 600
DdeI	CTNAG	2 cut(s)	90, 444
DpnI	GATC	2 cut(s)	227, 543
DpnII	GATC	2 cut(s)	225, 541
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	144
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	284
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	584
FaeI	CATG	5 cut(s)	15, 100, 181, 326, 344
FatI	CATG	5 cut(s)	11, 96, 177, 322, 340
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	217, 251, 492
FokI	GGATG	3 cut(s)	170, 218, 689
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	217, 251, 492
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	3 cut(s)	217, 251, 492
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	15, 100, 181, 326, 344
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	401, 416
Hpy166II	GTNNAC	2 cut(s)	457, 473
Hpy188I	TCNGA	3 cut(s)	124, 435, 579
Hpy188III	TCNNGA	2 cut(s)	75, 413
Hpy8I	GTNNAC	2 cut(s)	457, 473
HpyAV	CCTTC	2 cut(s)	130, 643
HpyCH4III	ACNGT	2 cut(s)	599, 640
HpyCH4V	TGCA	7 cut(s)	15, 152, 177, 212, 473, 552, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 618, 677
HpyF3I	CTNAG	2 cut(s)	90, 444
Hsp92II	CATG	5 cut(s)	15, 100, 181, 326, 344
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	225, 541
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	6 cut(s)	231, 377, 395, 456, 473, 522
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	2 cut(s)	493, 667
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	58, 284
MalI	GATC	2 cut(s)	227, 543
MboI	GATC	2 cut(s)	225, 541
MboII	GAAGA	2 cut(s)	34, 677
MfeI	CAATTG	2 cut(s)	363, 657
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	475, 584
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	3 cut(s)	66, 363, 657
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	81, 444
MnlI	CCTC	8 cut(s)	172, 196, 197, 307, 311, 362, 523, 622
Mox20I	TGGCCA	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	3 cut(s)	356, 449, 644
Msp20I	TGGCCA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	494
MunI	CAATTG	2 cut(s)	363, 657
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	158, 618, 677
NdeII	GATC	2 cut(s)	225, 541
NlaIII	CATG	5 cut(s)	15, 100, 181, 326, 344
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	100
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	3 cut(s)	218, 252, 493
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	584
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	396, 601
RsaNI	GTAC	2 cut(s)	395, 600
SacI	GAGCTC	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	356, 449, 644
SatI	GCNGC	3 cut(s)	217, 251, 492
Sau3AI	GATC	2 cut(s)	225, 541
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	475, 584
SetI	ASST	6 cut(s)	116, 130, 318, 396, 496, 584
SfaNI	GCATC	2 cut(s)	493, 667
Sse9I	AATT	3 cut(s)	66, 363, 657
SsiI	CCGC	3 cut(s)	216, 250, 298
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	599, 640
TasI	AATT	3 cut(s)	66, 363, 657
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	2 cut(s)	219, 253
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	3 cut(s)	356, 449, 644
Tru9I	TTAA	3 cut(s)	356, 449, 644
TscAI	CASTG	3 cut(s)	226, 480, 554
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	207, 311, 662
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	226, 480, 554
VneI	GTGCAC	1 cut(s)	471
VspI	ATTAAT	1 cut(s)	644
XagI	CCTNNNNNAGG	1 cut(s)	626
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.