RLG00000008751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000926
Physical Location & Seq
Reverse (-)
36291732 .. 36293825
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008751

Sequence Viewer

Length: 831 bp
ATGGATCCCTATTATGAACAAAGACTCAGAGACGAAGTCATTTACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAAACGCCGAAACCCCATTCCCATTCCCTTTCCCAATTCCACAATCCGAGCCACCCCAAATGGTAGAAACCCCCAATTGCCGTACCTGATCGCTGCCAAAGAAGGCCCCACCACCAAGAGGAAAACAAGAATTGAAATTGAATTGCCCAGCAGCAACAAGAAGCCCTCCCAACCCGACCCGCGTTCGAAATGCCCGGGTCCGGCCTTGAACGATGACTCAACCTCTAAGTGGCCCTCGTCTGGGTGGACAATGACTTCAGCCAAGCTCAATTTGGCTCCGGCGTCGGCGGAAGAGCAGTTGAGGCACCACGTGCTTCTGCTACACAACAAGGCCTTGGAGGCCTGCAGCGGATTCTTTAAGGGCAATGCCGGGTCGGATAGTGGGTCCGAGAGTGAGGAGGAAGAAGAGGATTGCAAGGTTGGAGATGAGGAGAATGAGGAGTACAAGTTGTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATAGTGGTGATTTCTATTGCTTGGTGTGTGGTGGGTTGGGGAAGACGAAGAAGATCAAGGGTTGTACCGGGCTTGTTCAGCACGCGGTTTTGATAAGCAAGACGAAGAAGAAGAGAGCTCACAGGGCTTTTGCTCAGTCAAACAGTAACCAACCTGTCTTCGTTGACGACGAGAATATACCCTTGGAAGGCGTCATTCAAATAGACAAGGCCAGCTCCGATATGCTCAAATCAGAAAATAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.74

Weight (kDa)

6.67

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 60, 378
AccII CGCG 2 cut(s) 256, 668
AciI CCGC 4 cut(s) 254, 362, 423, 668
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 315
AcvI CACGTG 1 cut(s) 385
AcyI GRCGYC 2 cut(s) 356, 774
AdeI CACNNNGTG 1 cut(s) 385
AfaI GTAC 3 cut(s) 158, 518, 649
AfiI CCNNNNNNNGG 6 cut(s) 192, 274, 303, 314, 315, 770
AgsI TTSAA 5 cut(s) 209, 215, 283, 532, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 3 cut(s) 340, 701, 798
AluI AGCT 3 cut(s) 340, 701, 798
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 6 cut(s) 178, 276, 305, 405, 414, 792
ApeKI GCWGC 3 cut(s) 167, 225, 420
ApoI RAATTY 1 cut(s) 532
AspS9I GGNCC 5 cut(s) 68, 179, 272, 306, 459
AsuC2I CCSGG 4 cut(s) 269, 270, 445, 652
AsuHPI GGTGA 1 cut(s) 602
AsuII TTCGAA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 3 cut(s) 68, 272, 459
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 60, 378
BanII GRGCYC 1 cut(s) 703
BbrPI CACGTG 1 cut(s) 385
BbsI GAAGAC 2 cut(s) 632, 733
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 3 cut(s) 154, 237, 432
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 4 cut(s) 269, 270, 445, 652
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 3 cut(s) 168, 226, 421
BlsI GCNGC 3 cut(s) 169, 227, 422
Bme1390I CCNGG 4 cut(s) 269, 270, 445, 652
Bme18I GGWCC 3 cut(s) 68, 272, 459
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 5 cut(s) 68, 179, 272, 306, 459
BmiI GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
BmrFI CCNGG 4 cut(s) 269, 270, 445, 652
BpiI GAAGAC 2 cut(s) 632, 733
Bpu14I TTCGAA 1 cut(s) 260
BpuMI CCSGG 4 cut(s) 269, 270, 445, 652
BsaAI YACGTR 1 cut(s) 385
BsaHI GRCGYC 2 cut(s) 356, 774
BsaJI CCNNGG 4 cut(s) 64, 268, 408, 765
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 539, 569
Bsc4I CCNNNNNNNGG 6 cut(s) 192, 274, 303, 314, 315, 770
Bse3DI GCAATG 1 cut(s) 445
BseDI CCNNGG 4 cut(s) 64, 268, 408, 765
BseLI CCNNNNNNNGG 6 cut(s) 192, 274, 303, 314, 315, 770
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 40, 731
BseRI GAGGAG 5 cut(s) 485, 518, 527, 560, 574
BseXI GCAGC 3 cut(s) 154, 237, 432
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 256, 668
BshFI GGCC 6 cut(s) 180, 278, 307, 407, 416, 794
BshNI GGYRCC 2 cut(s) 60, 378
BsiHKAI GWGCWC 1 cut(s) 703
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 5 cut(s) 269, 275, 353, 444, 651
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 6 cut(s) 192, 274, 303, 314, 315, 770
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 6 cut(s) 180, 278, 307, 407, 416, 794
BsoBI CYCGRG 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 3 cut(s) 4, 162, 636
BspACI CCGC 4 cut(s) 254, 362, 423, 668
BspANI GGCC 6 cut(s) 180, 278, 307, 407, 416, 794
BspCNI CTCAG 2 cut(s) 39, 730
BspFNI CGCG 2 cut(s) 256, 668
BspLI GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
BspMAI CTGCAG 1 cut(s) 422
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 260
BspT107I GGYRCC 2 cut(s) 60, 378
BsrDI GCAATG 1 cut(s) 445
BssECI CCNNGG 4 cut(s) 64, 268, 408, 765
BssMI GATC 3 cut(s) 4, 162, 636
BssNI GRCGYC 2 cut(s) 356, 774
BssT1I CCWWGG 3 cut(s) 64, 408, 765
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 3 cut(s) 360, 474, 689
BstACI GRCGYC 2 cut(s) 356, 774
BstAPI GCANNNNNTGC 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 385
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 418, 666, 796
BstDEI CTNAG 3 cut(s) 26, 300, 717
BstFNI CGCG 2 cut(s) 256, 668
BstKTI GATC 3 cut(s) 7, 165, 639
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 4, 162, 636
BstMWI GCNNNNNNNGC 5 cut(s) 376, 385, 413, 661, 707
BstSCI CCNGG 4 cut(s) 267, 268, 443, 650
BstSFI CTRYAG 1 cut(s) 418
BstUI CGCG 2 cut(s) 256, 668
BstV1I GCAGC 3 cut(s) 154, 237, 432
BstV2I GAAGAC 2 cut(s) 632, 733
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 6 cut(s) 180, 278, 307, 407, 416, 794
Cac8I GCNNGC 3 cut(s) 418, 666, 796
Cfr13I GGNCC 5 cut(s) 68, 179, 272, 306, 459
Cfr9I CCCGGG 1 cut(s) 268
CseI GACGC 2 cut(s) 345, 763
Csp6I GTAC 3 cut(s) 157, 517, 648
CviQI GTAC 3 cut(s) 157, 517, 648
DdeI CTNAG 3 cut(s) 26, 300, 717
DpnI GATC 3 cut(s) 6, 164, 638
DpnII GATC 3 cut(s) 4, 162, 636
DraIII CACNNNGTG 1 cut(s) 385
Eam1104I CTCTTC 3 cut(s) 360, 474, 689
EarI CTCTTC 3 cut(s) 360, 474, 689
EciI GGCGGA 1 cut(s) 377
Ecl136II GAGCTC 1 cut(s) 701
Eco130I CCWWGG 3 cut(s) 64, 408, 765
Eco147I AGGCCT 2 cut(s) 407, 416
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 3 cut(s) 68, 272, 459
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 315
Eco72I CACGTG 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 68, 179
EcoT14I CCWWGG 3 cut(s) 64, 408, 765
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 3 cut(s) 64, 408, 765
Esp3I CGTCTC 1 cut(s) 24
FaiI YATR 3 cut(s) 15, 761, 806
FaqI GGGAC 1 cut(s) 54
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 168, 226, 421
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 3 cut(s) 168, 226, 421
GluI GCNGC 3 cut(s) 168, 226, 421
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 6 cut(s) 180, 278, 307, 407, 416, 794
HapII CCGG 5 cut(s) 269, 275, 353, 444, 651
HgaI GACGC 2 cut(s) 345, 763
Hin1I GRCGYC 2 cut(s) 356, 774
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 3 cut(s) 24, 290, 426
HpaII CCGG 5 cut(s) 269, 275, 353, 444, 651
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 2 cut(s) 321, 748
Hpy188I TCNGA 6 cut(s) 29, 122, 451, 463, 802, 817
Hpy8I GTNNAC 2 cut(s) 321, 748
Hpy99I CGWCG 2 cut(s) 361, 755
HpyAV CCTTC 2 cut(s) 170, 764
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 420, 489
HpyF10VI GCNNNNNNNGC 5 cut(s) 376, 385, 413, 661, 707
HpyF3I CTNAG 3 cut(s) 26, 300, 717
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 2 cut(s) 356, 774
Kzo9I GATC 3 cut(s) 4, 162, 636
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 355, 803
Lsp1109I GCAGC 3 cut(s) 154, 237, 432
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 728
MalI GATC 3 cut(s) 6, 164, 638
MboI GATC 3 cut(s) 4, 162, 636
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 8 cut(s) 109, 149, 204, 210, 215, 343, 532, 577
MlyI GAGTC 2 cut(s) 18, 284
MmeI TCCRAC 2 cut(s) 429, 475
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 5 cut(s) 269, 275, 353, 444, 651
MspR9I CCNGG 4 cut(s) 269, 270, 445, 652
MunI CAATTG 1 cut(s) 149
MvnI CGCG 2 cut(s) 256, 668
MwoI GCNNNNNNNGC 5 cut(s) 376, 385, 413, 661, 707
NciI CCSGG 4 cut(s) 269, 270, 445, 652
NdeII GATC 3 cut(s) 4, 162, 636
NlaIV GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
NspV TTCGAA 1 cut(s) 260
PceI AGGCCT 2 cut(s) 407, 416
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PfeI GAWTC 1 cut(s) 426
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 3 cut(s) 169, 227, 422
PleI GAGTC 2 cut(s) 18, 284
PmaCI CACGTG 1 cut(s) 385
PmlI CACGTG 1 cut(s) 385
PpsI GAGTC 2 cut(s) 18, 284
Ppu21I YACGTR 1 cut(s) 385
PpuMI RGGWCCY 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 703
Psp5II RGGWCCY 1 cut(s) 68
PspCI CACGTG 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 351, 380, 460
PspPI GGNCC 5 cut(s) 68, 179, 272, 306, 459
PspPPI RGGWCCY 1 cut(s) 68
PstI CTGCAG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 3 cut(s) 158, 518, 649
RsaNI GTAC 3 cut(s) 157, 517, 648
SacI GAGCTC 1 cut(s) 703
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 168, 226, 421
Sau3AI GATC 3 cut(s) 4, 162, 636
Sau96I GGNCC 5 cut(s) 68, 179, 272, 306, 459
SchI GAGTC 2 cut(s) 18, 284
ScrFI CCNGG 4 cut(s) 269, 270, 445, 652
SduI GDGCHC 1 cut(s) 703
SfcI CTRYAG 1 cut(s) 418
SfiI GGCCNNNNNGGCC 1 cut(s) 413
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 3 cut(s) 68, 272, 459
SmaI CCCGGG 1 cut(s) 270
Sse9I AATT 8 cut(s) 109, 149, 204, 210, 215, 343, 532, 577
SseBI AGGCCT 2 cut(s) 407, 416
SsiI CCGC 4 cut(s) 254, 362, 423, 668
SstI GAGCTC 1 cut(s) 703
StuI AGGCCT 2 cut(s) 407, 416
StyD4I CCNGG 4 cut(s) 267, 268, 443, 650
StyI CCWWGG 3 cut(s) 64, 408, 765
TaaI ACNGT 1 cut(s) 728
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 260
TasI AATT 8 cut(s) 109, 149, 204, 210, 215, 343, 532, 577
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TseI GCWGC 3 cut(s) 167, 225, 420
TspDTI ATGAA 1 cut(s) 30
TspMI CCCGGG 1 cut(s) 268
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 3 cut(s) 68, 272, 459
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmaI CCCGGG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.