Rh7DG406500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000926
Physical Location & Seq
Forward (+)
56761620 .. 56773928
12309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG406500.1

Sequence Viewer

Length: 372 bp
ATGAGTGGCCATGATGTTTTCGTTTTAATGCCAAATGGAGGGGGTAAGAGCCTGACATATCAGGTACTTGAATCTTTTTCTCACGACTCTTTTGACTTGTTTCGGAGTGAGCCTGAGTTAAATGTTGACCAGTTGGATAGTGCACTGAAAGACAATGTGGCAGCTGAAACTGATGCTCCTGCTGAATATAGTGAAAAAGAGGCATTTGATGATCATCAGTGCAATGGTAAAGAACCAATCATCTGTCAGAGCTTTTTGAAAGATGACTGTACAGATAAAAGCATAGAAAGTCTTGATGAGGGAAAGACAGTATTAATGGAGGAAGCAATTGGAGAAGAAGCAAAGGATGCATTGGTAAAGAGTTCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

4.26

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 7
AfaI GTAC 2 cut(s) 66, 271
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 71, 259
AluBI AGCT 2 cut(s) 164, 252
AluI AGCT 2 cut(s) 164, 252
Alw21I GWGCWC 1 cut(s) 145
Alw44I GTGCAC 1 cut(s) 141
AoxI GGCC 1 cut(s) 7
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 161
AseI ATTAAT 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 173
BclI TGATCA 1 cut(s) 211
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmsI GCATC 2 cut(s) 163, 337
BsaBI GATNNNNATC 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 213
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 269
BsrI ACTGG 1 cut(s) 130
BssMI GATC 1 cut(s) 211
Bst4CI ACNGT 3 cut(s) 269, 310, 369
BstAPI GCANNNNNTGC 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 143, 224
Csp6I GTAC 2 cut(s) 65, 270
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 9, 51, 112, 164, 252
CviKI_1 RGCY 5 cut(s) 9, 51, 112, 164, 252
CviQI GTAC 2 cut(s) 65, 270
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 352
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 58, 189, 284
FatI CATG 1 cut(s) 10
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 1 cut(s) 14
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 71, 86
Hpy166II GTNNAC 3 cut(s) 127, 143, 365
Hpy188I TCNGA 2 cut(s) 105, 249
Hpy188III TCNNGA 2 cut(s) 83, 293
Hpy8I GTNNAC 3 cut(s) 127, 143, 365
HpyCH4III ACNGT 3 cut(s) 269, 310, 369
HpyCH4V TGCA 3 cut(s) 143, 222, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 47, 65, 126, 143, 192
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 2 cut(s) 163, 337
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 9
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 32, 193, 292, 313
Mox20I TGGCCA 1 cut(s) 9
Mph1103I ATGCAT 1 cut(s) 352
MscI TGGCCA 1 cut(s) 9
MseI TTAA 3 cut(s) 26, 119, 314
Msp20I TGGCCA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 164
MunI CAATTG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 352
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PshBI ATTAAT 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 66, 271
RsaNI GTAC 2 cut(s) 65, 270
SaqAI TTAA 3 cut(s) 26, 119, 314
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 66, 166, 254
SfaNI GCATC 2 cut(s) 163, 337
Sse9I AATT 1 cut(s) 327
TaaI ACNGT 3 cut(s) 269, 310, 369
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 26, 119, 314
Tru9I TTAA 3 cut(s) 26, 119, 314
TscAI CASTG 2 cut(s) 150, 224
TseI GCWGC 1 cut(s) 161
TspRI CASTG 2 cut(s) 150, 224
VneI GTGCAC 1 cut(s) 141
VspI ATTAAT 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.