RLG00000007052

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000926
Physical Location & Seq
Reverse (-)
13107120 .. 13112127
5008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007052

Sequence Viewer

Length: 972 bp
ATGGATCCTTATTATGAACAAAGCCTCAGAGACGAAGTCATTTACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAATCGCCGAAACCCCATTCCCATTCCCTTTCCCAATTCCACAATCCGAGCCACCCCAAATGGCGGAAACCCCCAATTGCCGTACCCGATCGCCGCCCAAGAAGGCCCCACCACCAAGAGGAAAACAAGAACCGAAATTGAATTGCCCAGCAGCAACAAGAAGCCCTCCCAACCAGACCCGCGTTGGGAATGCCCGGGTCCGGCCTTGAACGATTACTCAACCTCTGAGTGGCCTCCCAAGCTCAATTTGGCTCCGGCGTTGGCGGAAGAGCAGTTGAGGCACCACGCGCTTCGGCTACACAACAAGGCCTTGGAGGCCAGCAGTGGATTCTTTAAGGGCAATGCCGGGTCGGGTAGTGGGTCCGAGAGTGAGGAGGAAGAAGAGGATTGCAAGGTTGGAGATGAGAAGAATGAGAAGTACAAGTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATAGTGGTGATTTCTATTGCTTGGTGTGTGGTGGGTTGGGGAAGACAAAGAAGATCAAGGGTTGTACCGGGCTTGTTCAACACGCGGTTTCGATAAGCAAGACGAAGAAGAAGAGAGCTCACAGGGCTTTTGCTCAGCTCAGAGTAGCAAACGCTGACGACGTCGTCGAAGCTATCGGGTTTAGCAATATGCGAAGCTATGGCAGGATTGTGGGCAGTGATGTGGGAGCACTGGCGGATGTGGAATCAATCTTGGAGTTATTGTTTGAGCTTGACGAACGCATGGCTTGGCTCTATTGGTTTCCGATGTGGCGGAACACAACAAACCAGAGGCGCGTGTTGTTGCGTTTCTGTAGTGACAGAAACAGAGTTGCTCGATTTACTAATTCAATAGTAATTATTGTCTTCCTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.48

Weight (kDa)

8.13

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 719
AatII GACGTC 1 cut(s) 720
AccB1I GGYRCC 2 cut(s) 60, 354
AccII CGCG 4 cut(s) 256, 362, 641, 891
AciI CCGC 7 cut(s) 138, 168, 254, 338, 641, 791, 868
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 3 cut(s) 158, 494, 622
AfiI CCNNNNNNNGG 5 cut(s) 137, 192, 259, 274, 303
AgsI TTSAA 5 cut(s) 215, 283, 505, 635, 945
AluBI AGCT 6 cut(s) 316, 674, 694, 728, 753, 826
AluI AGCT 6 cut(s) 316, 674, 694, 728, 753, 826
Alw21I GWGCWC 2 cut(s) 676, 787
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 5 cut(s) 178, 276, 305, 381, 390
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 505
AspLEI GCGC 2 cut(s) 364, 891
AspS9I GGNCC 4 cut(s) 68, 179, 272, 435
AsuC2I CCSGG 4 cut(s) 269, 270, 421, 625
AsuHPI GGTGA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 3 cut(s) 68, 272, 435
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 60, 354
BanII GRGCYC 1 cut(s) 676
BbsI GAAGAC 2 cut(s) 605, 952
Bbv12I GWGCWC 2 cut(s) 676, 787
BbvI GCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 4 cut(s) 269, 270, 421, 625
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 907
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 2 cut(s) 168, 226
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 2 cut(s) 169, 227
Bme1390I CCNGG 4 cut(s) 269, 270, 421, 625
Bme18I GGWCC 3 cut(s) 68, 272, 435
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 4 cut(s) 68, 179, 272, 435
BmiI GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 327, 356, 436
BmrFI CCNGG 4 cut(s) 269, 270, 421, 625
BpiI GAAGAC 2 cut(s) 605, 952
Bpu1102I GCTNAGC 1 cut(s) 690
BpuMI CCSGG 4 cut(s) 269, 270, 421, 625
BsaHI GRCGYC 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 64, 268, 384
BsaXI ACNNNNNCTCC 4 cut(s) 512, 542, 803, 833
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 192, 259, 274, 303
Bse1I ACTGG 1 cut(s) 792
Bse3DI GCAATG 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 64, 268, 384
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 5 cut(s) 137, 192, 259, 274, 303
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 4 cut(s) 40, 291, 704, 709
BseNI ACTGG 1 cut(s) 792
BseRI GAGGAG 3 cut(s) 461, 533, 547
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 4 cut(s) 256, 362, 641, 891
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 5 cut(s) 180, 278, 307, 383, 392
BshNI GGYRCC 2 cut(s) 60, 354
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 676, 787
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 5 cut(s) 269, 275, 329, 420, 624
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 5 cut(s) 137, 192, 259, 274, 303
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 5 cut(s) 180, 278, 307, 383, 392
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 676, 787
Bsp143I GATC 3 cut(s) 4, 162, 609
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 7 cut(s) 138, 168, 254, 338, 641, 791, 868
BspANI GGCC 5 cut(s) 180, 278, 307, 383, 392
BspCNI CTCAG 4 cut(s) 39, 292, 703, 708
BspFNI CGCG 4 cut(s) 256, 362, 641, 891
BspLI GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 327, 356, 436
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 2 cut(s) 60, 354
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 1 cut(s) 792
BssECI CCNNGG 3 cut(s) 64, 268, 384
BssMI GATC 3 cut(s) 4, 162, 609
BssNI GRCGYC 1 cut(s) 717
BssT1I CCWWGG 2 cut(s) 64, 384
Bst6I CTCTTC 3 cut(s) 336, 450, 662
BstACI GRCGYC 1 cut(s) 717
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 4 cut(s) 26, 300, 690, 695
BstF5I GGATG 1 cut(s) 799
BstFNI CGCG 4 cut(s) 256, 362, 641, 891
BstHHI GCGC 2 cut(s) 364, 891
BstKTI GATC 3 cut(s) 7, 165, 612
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 4, 162, 609
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 5 cut(s) 313, 352, 361, 389, 680
BstSCI CCNGG 4 cut(s) 267, 268, 419, 623
BstSFI CTRYAG 1 cut(s) 907
BstUI CGCG 4 cut(s) 256, 362, 641, 891
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 2 cut(s) 605, 952
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 5 cut(s) 180, 278, 307, 383, 392
BtsCI GGATG 1 cut(s) 799
BtsI GCAGTG 2 cut(s) 403, 778
BtsIMutI CAGTG 3 cut(s) 403, 778, 785
Cac8I GCNNGC 1 cut(s) 394
CfoI GCGC 2 cut(s) 364, 891
Cfr13I GGNCC 4 cut(s) 68, 179, 272, 435
Cfr9I CCCGGG 1 cut(s) 268
Csp6I GTAC 3 cut(s) 157, 493, 621
CviAII CATG 1 cut(s) 838
CviQI GTAC 3 cut(s) 157, 493, 621
DdeI CTNAG 4 cut(s) 26, 300, 690, 695
DpnI GATC 3 cut(s) 6, 164, 611
DpnII GATC 3 cut(s) 4, 162, 609
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
Eam1104I CTCTTC 3 cut(s) 336, 450, 662
EarI CTCTTC 3 cut(s) 336, 450, 662
EciI GGCGGA 4 cut(s) 153, 353, 806, 883
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 64, 384
Eco147I AGGCCT 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 3 cut(s) 68, 272, 435
Eco53kI GAGCTC 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 674
EcoO109I RGGNCCY 2 cut(s) 68, 179
EcoT14I CCWWGG 2 cut(s) 64, 384
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 2 cut(s) 64, 384
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 841
FaiI YATR 6 cut(s) 15, 746, 756, 839, 968, 970
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 837
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 168, 226
FokI GGATG 1 cut(s) 806
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 2 cut(s) 168, 226
GlaI GCGC 2 cut(s) 363, 890
GluI GCNGC 2 cut(s) 168, 226
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 5 cut(s) 180, 278, 307, 383, 392
HapII CCGG 5 cut(s) 269, 275, 329, 420, 624
HhaI GCGC 2 cut(s) 364, 891
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 1 cut(s) 841
Hin6I GCGC 2 cut(s) 362, 889
HinP1I GCGC 2 cut(s) 362, 889
HinfI GANTC 2 cut(s) 402, 800
HpaII CCGG 5 cut(s) 269, 275, 329, 420, 624
HphI GGTGA 1 cut(s) 575
Hpy188I TCNGA 6 cut(s) 29, 122, 301, 439, 698, 861
Hpy99I CGWCG 3 cut(s) 719, 722, 725
HpyAV CCTTC 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 5 cut(s) 313, 352, 361, 389, 680
HpyF3I CTNAG 4 cut(s) 26, 300, 690, 695
HpySE526I ACGT 1 cut(s) 717
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 1 cut(s) 841
HspAI GCGC 2 cut(s) 362, 889
Kzo9I GATC 3 cut(s) 4, 162, 609
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 2 cut(s) 331, 782
Lsp1109I GCAGC 1 cut(s) 237
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 1 cut(s) 911
MalI GATC 3 cut(s) 6, 164, 611
MboI GATC 3 cut(s) 4, 162, 609
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 676, 787
MluCI AATT 9 cut(s) 109, 149, 210, 215, 319, 505, 550, 940, 951
MmeI TCCRAC 1 cut(s) 451
MseI TTAA 1 cut(s) 408
MspI CCGG 5 cut(s) 269, 275, 329, 420, 624
MspR9I CCNGG 4 cut(s) 269, 270, 421, 625
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 4 cut(s) 256, 362, 641, 891
MwoI GCNNNNNNNGC 5 cut(s) 313, 352, 361, 389, 680
NciI CCSGG 4 cut(s) 269, 270, 421, 625
NdeII GATC 3 cut(s) 4, 162, 609
NlaIII CATG 1 cut(s) 841
NlaIV GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 327, 356, 436
NmuCI GTSAC 1 cut(s) 911
PceI AGGCCT 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 714, 720
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 402, 800
PflFI GACNNNGTC 3 cut(s) 35, 716, 719
PkrI GCNGC 2 cut(s) 169, 227
Ple19I CGATCG 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 8 cut(s) 6, 62, 70, 181, 273, 327, 356, 436
PspPI GGNCC 4 cut(s) 68, 179, 272, 435
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 3 cut(s) 35, 716, 719
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 3 cut(s) 158, 494, 622
RsaNI GTAC 3 cut(s) 157, 493, 621
SacI GAGCTC 1 cut(s) 676
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 168, 226
Sau3AI GATC 3 cut(s) 4, 162, 609
Sau96I GGNCC 4 cut(s) 68, 179, 272, 435
ScrFI CCNGG 4 cut(s) 269, 270, 421, 625
SduI GDGCHC 2 cut(s) 676, 787
SfcI CTRYAG 1 cut(s) 907
SfiI GGCCNNNNNGGCC 1 cut(s) 389
SinI GGWCC 3 cut(s) 68, 272, 435
SmaI CCCGGG 1 cut(s) 270
Sse9I AATT 9 cut(s) 109, 149, 210, 215, 319, 505, 550, 940, 951
SseBI AGGCCT 1 cut(s) 383
SsiI CCGC 7 cut(s) 138, 168, 254, 338, 641, 791, 868
SstI GAGCTC 1 cut(s) 676
StuI AGGCCT 1 cut(s) 383
StyD4I CCNGG 4 cut(s) 267, 268, 419, 623
StyI CCWWGG 2 cut(s) 64, 384
TaiI ACGT 1 cut(s) 720
TaqI TCGA 3 cut(s) 647, 723, 931
TasI AATT 9 cut(s) 109, 149, 210, 215, 319, 505, 550, 940, 951
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 402, 800
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 3 cut(s) 403, 778, 792
TseFI GTSAC 1 cut(s) 911
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 911
TspDTI ATGAA 1 cut(s) 30
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 3 cut(s) 403, 778, 792
Tth111I GACNNNGTC 3 cut(s) 35, 716, 719
VpaK11BI GGWCC 3 cut(s) 68, 272, 435
XapI RAATTY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 2 cut(s) 255, 319
XmaI CCCGGG 1 cut(s) 268
ZraI GACGTC 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.