Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001974.1

Orthogroup ID

OG0000926

Physical Location & Seq

Genomic Coordinates Forward (+)

118847 .. 120972

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001974.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgtcgtcttcttcttcttcgactcaagtggccgccaatgtcgaagccgagtacgccaagtccggcaagtcctcgtgcaagaagtgctcggaaccgatcgagaagaaagctctgaggctgggcaccaaagacgcgcgtggttataccaagtggcaccacttgtgctgcttcagttttgggtccgacccggttgcttcggttgacaagattaaagggtttcagtctctcaagagtagtgatcaggaagctttgaaggatgaatttgagaaatctaaagaggaggattcaaatggaaagaaaagttctaaaaatcgaaaggttcgtgaagtagatcatgaagctgaagatgaaaatgaaggggaaaggaagttgaagaaatcaaaggattcttcttcgtcccatgtcgaagccgagtacgccaagtccagcaagtcctcgtgcaacaagtgctcgaaacctatcgagaagaaagctctgaggctgggcaccaaagacgcgcgtggttataccaagtggcaccacttgtgctgcttcagttttgggtccgacccggttgcttcggttgacaagattaaagggtttcagtctctcaagagtagtgatcaggaagctttgaaggaaagggagttaaagaaagcgaaggatcataccttcattcagtttatccgaactcatttcactcggttgctgtgtctctggttctttcggcagaataggttcttgatgcttgtgatgattacggtgatttctggaggtttgaaggctggttttatcgaatttggcacaggtcttgctcgatccattgcaatggaaggctattaccactgtttgcttcattatggaatggaggctctgtctttcacgacggtgtggtcgctggtcgtggcgtggcatagctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNK3P zf-PARP

Protein Analysis

300

Amino Acids

33.73

Weight (kDa)

9.18

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78810 AT1G78810 AT1G78810
fragaria_vesca	FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260
malus_domestica	MD11G1264000.v1.1
prunus_persica	Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1
pyrus_communis	pycom11g23250
rosa_chinensis	RchiOBHm_Chr1g0314351 RchiOBHm_Chr1g0357411 RchiOBHm_Chr5g0030881 RchiOBHm_Chr5g0030891 RchiOBHm_Chr7g0196621
rosa_laevigata	RLG00000007052 RLG00000008751 RLG00000033260 RLG00000033263
rosa_multiflora	Rmu_co8438113.1_g000001 Rmu_co8456075.1_g000001 Rmu_sc0001974.1_g000027 Rmu_sc0001974.1_g000028 Rmu_sc0002294.1_g000038
rosa_roxburghii	Rroxscaffold_1G00049380
rosa_rugosa	Rorug01G0364900 Rorug05G0121100 Rorug05G0121200 Rorug05G0121200 Rorug05G0121200 Rorug05G0121300 Rorug05G0121400
rosa_samantha	Rh1AG010400 Rh1AG270600 Rh2CG352200 Rh3CG359400 Rh4AG035000 Rh4BG053800 Rh4CG032500 Rh4DG105900 Rh5AG214200 Rh5AG214300 Rh5AG214400 Rh5BG213400 Rh5CG237200 Rh5CG237300 Rh5CG377800 Rh5DG217800 Rh7DG204700 Rh7DG406500
rosa_wichuraiana	Rw5G019580 Rw5G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	871
AccB1I	GGYRCC	4 cut(s)	122, 153, 485, 516
AccII	CGCG	4 cut(s)	134, 136, 497, 499
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	651, 792
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	260, 776
AcuI	CTGAAG	3 cut(s)	154, 363, 517
AfaI	GTAC	2 cut(s)	53, 416
AgsI	TTSAA	5 cut(s)	253, 288, 373, 616, 760
AleI	CACNNNNGTG	1 cut(s)	866
AluBI	AGCT	6 cut(s)	110, 248, 341, 473, 611, 897
AluI	AGCT	6 cut(s)	110, 248, 341, 473, 611, 897
Alw21I	GWGCWC	2 cut(s)	89, 452
Alw26I	GTCTC	3 cut(s)	228, 591, 698
AlwI	GGATC	2 cut(s)	651, 792
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	165, 528
ApoI	RAATTY	2 cut(s)	260, 776
Asp700I	GAANNNNTTC	1 cut(s)	716
AspLEI	GCGC	2 cut(s)	136, 499
AspS9I	GGNCC	2 cut(s)	180, 543
AsuC2I	CCSGG	2 cut(s)	188, 551
AsuHPI	GGTGA	1 cut(s)	754
AvaII	GGWCC	2 cut(s)	180, 543
BaeGI	GKGCMC	2 cut(s)	125, 488
BanI	GGYRCC	4 cut(s)	122, 153, 485, 516
BauI	CACGAG	2 cut(s)	73, 436
Bbv12I	GWGCWC	2 cut(s)	89, 452
BbvI	GCAGC	2 cut(s)	152, 515
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 536, 570
BclI	TGATCA	2 cut(s)	238, 601
BcnI	CCSGG	2 cut(s)	188, 551
BcoDI	GTCTC	3 cut(s)	228, 591, 698
BisI	GCNGC	3 cut(s)	33, 166, 529
BlsI	GCNGC	3 cut(s)	34, 167, 530
Bme1390I	CCNGG	2 cut(s)	188, 551
Bme18I	GGWCC	2 cut(s)	180, 543
BmgT120I	GGNCC	2 cut(s)	180, 543
BmiI	GGNNCC	7 cut(s)	93, 124, 155, 181, 487, 518, 544
BmrFI	CCNGG	2 cut(s)	188, 551
BmsI	GCATC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	3 cut(s)	9, 212, 575
BpuMI	CCSGG	2 cut(s)	188, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bse3DI	GCAATG	2 cut(s)	801, 813
BseGI	GGATG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	801, 813
BseMII	CTCAG	2 cut(s)	104, 467
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	2 cut(s)	125, 488
BseXI	GCAGC	2 cut(s)	152, 515
BseYI	CCCAGC	2 cut(s)	118, 481
Bsh1236I	CGCG	4 cut(s)	134, 136, 497, 499
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	4 cut(s)	122, 153, 485, 516
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	89, 452
BsiSI	CCGG	3 cut(s)	63, 188, 551
BslFI	GGGAC	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	228, 591, 698
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	4 cut(s)	89, 125, 452, 488
Bsp143I	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	105, 468
BspFNI	CGCG	4 cut(s)	134, 136, 497, 499
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	7 cut(s)	93, 124, 155, 181, 487, 518, 544
BspPI	GGATC	2 cut(s)	651, 792
BspT107I	GGYRCC	4 cut(s)	122, 153, 485, 516
BsrDI	GCAATG	2 cut(s)	801, 813
BssMI	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
BssSI	CACGAG	2 cut(s)	73, 436
Bst2BI	CACGAG	2 cut(s)	73, 436
Bst4CI	ACNGT	3 cut(s)	742, 827, 868
BstAPI	GCANNNNNTGC	2 cut(s)	84, 447
BstDEI	CTNAG	2 cut(s)	113, 476
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	4 cut(s)	134, 136, 497, 499
BstHHI	GCGC	2 cut(s)	136, 499
BstKTI	GATC	6 cut(s)	99, 241, 334, 604, 646, 800
BstMAI	GTCTC	3 cut(s)	228, 591, 698
BstMBI	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 84, 416, 447
BstSCI	CCNGG	2 cut(s)	186, 549
BstSLI	GKGCMC	2 cut(s)	125, 488
BstUI	CGCG	4 cut(s)	134, 136, 497, 499
BstV1I	GCAGC	2 cut(s)	152, 515
BstXI	CCANNNNNNTGG	1 cut(s)	808
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	823
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	2 cut(s)	136, 499
Cfr13I	GGNCC	2 cut(s)	180, 543
CseI	GACGC	2 cut(s)	140, 503
Csp6I	GTAC	2 cut(s)	52, 415
CviAII	CATG	2 cut(s)	335, 401
CviQI	GTAC	2 cut(s)	52, 415
DdeI	CTNAG	2 cut(s)	113, 476
DpnI	GATC	6 cut(s)	98, 240, 333, 603, 645, 799
DpnII	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
DrdI	GACNNNNNNGTC	1 cut(s)	871
DseDI	GACNNNNNNGTC	1 cut(s)	871
EaeI	YGGCCR	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	180, 543
Eco57I	CTGAAG	3 cut(s)	154, 363, 517
FaeI	CATG	2 cut(s)	338, 404
FaiI	YATR	8 cut(s)	144, 336, 402, 507, 648, 840, 894, 901
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	334, 400
FbaI	TGATCA	2 cut(s)	238, 601
Fnu4HI	GCNGC	3 cut(s)	33, 166, 529
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	33, 166, 529
GlaI	GCGC	2 cut(s)	135, 498
GluI	GCNGC	3 cut(s)	33, 166, 529
GsaI	CCCAGC	2 cut(s)	122, 485
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	3 cut(s)	63, 188, 551
HgaI	GACGC	2 cut(s)	140, 503
HhaI	GCGC	2 cut(s)	136, 499
Hin1II	CATG	2 cut(s)	338, 404
Hin6I	GCGC	2 cut(s)	134, 497
HinP1I	GCGC	2 cut(s)	134, 497
HincII	GTYRAC	2 cut(s)	202, 565
HindII	GTYRAC	2 cut(s)	202, 565
HindIII	AAGCTT	2 cut(s)	246, 609
HinfI	GANTC	3 cut(s)	22, 284, 386
HpaII	CCGG	3 cut(s)	63, 188, 551
HphI	GGTGA	1 cut(s)	754
Hpy166II	GTNNAC	2 cut(s)	202, 565
Hpy188I	TCNGA	6 cut(s)	91, 114, 184, 477, 547, 668
Hpy8I	GTNNAC	2 cut(s)	202, 565
Hpy99I	CGWCG	1 cut(s)	868
HpyAV	CCTTC	7 cut(s)	247, 350, 610, 634, 661, 754, 806
HpyCH4III	ACNGT	3 cut(s)	742, 827, 868
HpyCH4V	TGCA	3 cut(s)	78, 441, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 84, 416, 447
HpyF3I	CTNAG	2 cut(s)	113, 476
Hsp92II	CATG	2 cut(s)	338, 404
HspAI	GCGC	2 cut(s)	134, 497
Ksp22I	TGATCA	2 cut(s)	238, 601
Kzo9I	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
Lsp1109I	GCAGC	2 cut(s)	152, 515
LweI	GCATC	1 cut(s)	714
MalI	GATC	6 cut(s)	98, 240, 333, 603, 645, 799
MboI	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
MboII	GAAGA	9 cut(s)	3, 6, 9, 115, 356, 381, 384, 385, 478
MhlI	GDGCHC	4 cut(s)	89, 125, 452, 488
MluCI	AATT	2 cut(s)	260, 776
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	207, 570
MnlI	CCTC	8 cut(s)	82, 108, 271, 274, 445, 471, 746, 841
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	3 cut(s)	210, 573, 629
MslI	CAYNNNNRTG	2 cut(s)	806, 866
MspI	CCGG	3 cut(s)	63, 188, 551
MspR9I	CCNGG	2 cut(s)	188, 551
MvnI	CGCG	4 cut(s)	134, 136, 497, 499
MwoI	GCNNNNNNNGC	4 cut(s)	53, 84, 416, 447
NciI	CCSGG	2 cut(s)	188, 551
NdeII	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
NlaIII	CATG	2 cut(s)	338, 404
NlaIV	GGNNCC	7 cut(s)	93, 124, 155, 181, 487, 518, 544
NmeAIII	GCCGAG	2 cut(s)	73, 436
OliI	CACNNNNGTG	1 cut(s)	866
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	2 cut(s)	284, 386
PkrI	GCNGC	3 cut(s)	34, 167, 530
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspFI	CCCAGC	2 cut(s)	118, 481
PspN4I	GGNNCC	7 cut(s)	93, 124, 155, 181, 487, 518, 544
PspPI	GGNCC	2 cut(s)	180, 543
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	53, 416
RsaNI	GTAC	2 cut(s)	52, 415
RseI	CAYNNNNRTG	2 cut(s)	806, 866
SaqAI	TTAA	3 cut(s)	210, 573, 629
SatI	GCNGC	3 cut(s)	33, 166, 529
Sau3AI	GATC	6 cut(s)	96, 238, 331, 601, 643, 797
Sau96I	GGNCC	2 cut(s)	180, 543
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	188, 551
SduI	GDGCHC	4 cut(s)	89, 125, 452, 488
SfaNI	GCATC	1 cut(s)	714
SinI	GGWCC	2 cut(s)	180, 543
SmiMI	CAYNNNNRTG	2 cut(s)	806, 866
SmlI	CTYRAG	3 cut(s)	24, 227, 590
SmoI	CTYRAG	3 cut(s)	24, 227, 590
Sse9I	AATT	2 cut(s)	260, 776
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	186, 549
TaaI	ACNGT	3 cut(s)	742, 827, 868
TaqI	TCGA	9 cut(s)	20, 42, 99, 313, 405, 452, 462, 774, 796
TasI	AATT	2 cut(s)	260, 776
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	284, 386
Tru1I	TTAA	3 cut(s)	210, 573, 629
Tru9I	TTAA	3 cut(s)	210, 573, 629
TscAI	CASTG	1 cut(s)	830
TseI	GCWGC	2 cut(s)	165, 528
TspDTI	ATGAA	6 cut(s)	273, 351, 363, 369, 643, 824
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	180, 543
XapI	RAATTY	2 cut(s)	260, 776
XmnI	GAANNNNTTC	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.