RchiOBHm_Chr1g0314351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000926
Physical Location & Seq
Forward (+)
1628742 .. 1629660
919 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54499

Sequence Viewer

Length: 849 bp
ATGGTAGGTTCTTTTGCCCGCCGTCGATTGCGTTTTTGTATATGTACGGAACTATGTTATGAAGTCATTTACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAATCGCCGAAACCCCATTCCCAATTCCAAAATCCGAGCCACGCCAAATGGCGGAAAACCCCAATTGCCGTACCCGATTGCCGCCCAAGAAGGCCCCACCACCAAGAGGAAGACAAGAACCGAAATTGAATTGCCCAGCAGCAACAAGAAGCCCTCACAACCCGACCCGCGTTGGGAATGCCCGCATCTGGCCTCGAACGATGACTCAACCTCTGAGTGGCCAGTGACTTCAGCCAAGCTCAATTTGGCTCCGGCGTCGGCGGAAGAGCAGCTGAGGCACCACGCACTTCGGCTACACAACCGGGCCTTGGAGGCCTGTGGCGGATTCTTTAAGGGCAATGCCGGGTCGGGTAGTGGGTCCGAGAGTGAGGAGGGAGAAGAGGATTGCAAGGTTGGAGATGAGGAGAATGAGGAGTACAAGTTTTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATGGTGGTGAGTTCCATTGCTTGGTGTGTGGTGGGTTGGGGAAGACGAAGAAGATCAAGGGTTGTGTCGGGCTTGTTCACCACGCGGTTTCGATAAGCAAGACGAAGAAGAAGAGAGCTCATAGGGCTTTTGCTCAGGTTGTGTGTAGGGTTTTAGGGTGGGATTTTGACCGGCTGCCCATTGTTGTGCTCAAAGGCGAAAGGCTCAGTTTTTATTTGGCAAAACCGGGCGATGAATGGGTGATTAGAGATTGTTTTTCGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.54

Weight (kDa)

8.58

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 87, 378
AccB7I CCANNNNNTGG 1 cut(s) 604
AccII CGCG 2 cut(s) 271, 668
AciI CCGC 8 cut(s) 19, 153, 183, 269, 284, 362, 423, 668
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 3 cut(s) 46, 173, 518
AfiI CCNNNNNNNGG 7 cut(s) 152, 207, 274, 289, 318, 409, 604
AgsI TTSAA 2 cut(s) 230, 532
AluBI AGCT 3 cut(s) 340, 373, 701
AluI AGCT 3 cut(s) 340, 373, 701
Alw21I GWGCWC 2 cut(s) 703, 774
AoxI GGCC 5 cut(s) 193, 291, 320, 405, 414
ApeKI GCWGC 3 cut(s) 240, 370, 757
ApoI RAATTY 1 cut(s) 532
AspS9I GGNCC 4 cut(s) 95, 194, 405, 459
AsuC2I CCSGG 3 cut(s) 404, 445, 810
AsuHPI GGTGA 3 cut(s) 602, 653, 835
AvaII GGWCC 2 cut(s) 95, 459
BalI TGGCCA 1 cut(s) 322
BanI GGYRCC 2 cut(s) 87, 378
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 2 cut(s) 218, 632
Bbv12I GWGCWC 2 cut(s) 703, 774
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 3 cut(s) 252, 382, 744
BccI CCATC 1 cut(s) 578
BceAI ACGGC 2 cut(s) 6, 154
BcnI CCSGG 3 cut(s) 404, 445, 810
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 4 cut(s) 183, 241, 371, 758
BlsI GCNGC 4 cut(s) 184, 242, 372, 759
Bme1390I CCNGG 3 cut(s) 404, 445, 810
Bme18I GGWCC 2 cut(s) 95, 459
BmgT120I GGNCC 4 cut(s) 95, 194, 405, 459
BmiI GGNNCC 6 cut(s) 89, 97, 196, 351, 380, 460
BmrFI CCNGG 3 cut(s) 404, 445, 810
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 2 cut(s) 218, 632
Bpu10I CCTNAGC 2 cut(s) 374, 717
BpuMI CCSGG 3 cut(s) 404, 445, 810
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 91, 408
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 539, 569
Bsc4I CCNNNNNNNGG 7 cut(s) 152, 207, 274, 289, 318, 409, 604
Bse118I RCCGGY 1 cut(s) 753
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 445, 598
BseDI CCNNGG 2 cut(s) 91, 408
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 7 cut(s) 152, 207, 274, 289, 318, 409, 604
BseMI GCAATG 2 cut(s) 445, 598
BseMII CTCAG 4 cut(s) 306, 365, 731, 802
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 5 cut(s) 485, 518, 527, 560, 574
BseXI GCAGC 3 cut(s) 252, 382, 744
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 271, 668
BshFI GGCC 5 cut(s) 195, 293, 322, 407, 416
BshNI GGYRCC 2 cut(s) 87, 378
BsiHKAI GWGCWC 2 cut(s) 703, 774
BsiSI CCGG 5 cut(s) 353, 403, 444, 754, 809
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 7 cut(s) 152, 207, 274, 289, 318, 409, 604
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 5 cut(s) 195, 293, 322, 407, 416
Bsp1286I GDGCHC 2 cut(s) 703, 774
Bsp143I GATC 1 cut(s) 636
BspACI CCGC 8 cut(s) 19, 153, 183, 269, 284, 362, 423, 668
BspANI GGCC 5 cut(s) 195, 293, 322, 407, 416
BspCNI CTCAG 4 cut(s) 307, 366, 730, 801
BspFNI CGCG 2 cut(s) 271, 668
BspLI GGNNCC 6 cut(s) 89, 97, 196, 351, 380, 460
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 87, 378
BsrDI GCAATG 2 cut(s) 445, 598
BsrFI RCCGGY 1 cut(s) 753
BsrI ACTGG 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 753
BssECI CCNNGG 2 cut(s) 91, 408
BssMI GATC 1 cut(s) 636
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 91, 408
Bst6I CTCTTC 3 cut(s) 360, 474, 689
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 19, 284
BstDEI CTNAG 4 cut(s) 315, 374, 717, 788
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 2 cut(s) 271, 668
BstKTI GATC 1 cut(s) 639
BstMBI GATC 1 cut(s) 636
BstMWI GCNNNNNNNGC 3 cut(s) 376, 413, 707
BstSCI CCNGG 3 cut(s) 402, 443, 808
BstUI CGCG 2 cut(s) 271, 668
BstV1I GCAGC 3 cut(s) 252, 382, 744
BstV2I GAAGAC 2 cut(s) 218, 632
BsuRI GGCC 5 cut(s) 195, 293, 322, 407, 416
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 19, 284
Cfr10I RCCGGY 1 cut(s) 753
Cfr13I GGNCC 4 cut(s) 95, 194, 405, 459
CseI GACGC 1 cut(s) 345
Csp6I GTAC 3 cut(s) 45, 172, 517
CviQI GTAC 3 cut(s) 45, 172, 517
DdeI CTNAG 4 cut(s) 315, 374, 717, 788
DpnI GATC 1 cut(s) 638
DpnII GATC 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 3 cut(s) 360, 474, 689
EarI CTCTTC 3 cut(s) 360, 474, 689
EciI GGCGGA 3 cut(s) 168, 377, 438
Ecl136II GAGCTC 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 91, 408
Eco147I AGGCCT 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 2 cut(s) 95, 459
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 95, 194
EcoT14I CCWWGG 2 cut(s) 91, 408
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 91, 408
FaiI YATR 5 cut(s) 41, 43, 55, 60, 705
FaqI GGGAC 1 cut(s) 81
FauI CCCGC 3 cut(s) 26, 276, 291
Fnu4HI GCNGC 4 cut(s) 183, 241, 371, 758
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 4 cut(s) 183, 241, 371, 758
GluI GCNGC 4 cut(s) 183, 241, 371, 758
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 5 cut(s) 195, 293, 322, 407, 416
HapII CCGG 5 cut(s) 353, 403, 444, 754, 809
HgaI GACGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 356
HinfI GANTC 2 cut(s) 305, 426
HpaII CCGG 5 cut(s) 353, 403, 444, 754, 809
HphI GGTGA 3 cut(s) 602, 653, 835
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 3 cut(s) 137, 316, 463
Hpy8I GTNNAC 1 cut(s) 661
Hpy99I CGWCG 2 cut(s) 27, 361
HpyAV CCTTC 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 376, 413, 707
HpyF3I CTNAG 4 cut(s) 315, 374, 717, 788
Hsp92I GRCGYC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 636
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 3 cut(s) 252, 382, 744
LweI GCATC 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 638
MboI GATC 1 cut(s) 636
MboII GAAGA 9 cut(s) 223, 377, 491, 637, 643, 646, 700, 703, 706
MfeI CAATTG 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 703, 774
MlsI TGGCCA 1 cut(s) 322
MluCI AATT 7 cut(s) 124, 164, 225, 230, 343, 532, 577
MluNI TGGCCA 1 cut(s) 322
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 475
Mox20I TGGCCA 1 cut(s) 322
MscI TGGCCA 1 cut(s) 322
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 767
Msp20I TGGCCA 1 cut(s) 322
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 5 cut(s) 353, 403, 444, 754, 809
MspR9I CCNGG 3 cut(s) 404, 445, 810
MunI CAATTG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 284
MvnI CGCG 2 cut(s) 271, 668
MwoI GCNNNNNNNGC 3 cut(s) 376, 413, 707
NciI CCSGG 3 cut(s) 404, 445, 810
NdeII GATC 1 cut(s) 636
NlaIV GGNNCC 6 cut(s) 89, 97, 196, 351, 380, 460
NmuCI GTSAC 1 cut(s) 325
PceI AGGCCT 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 4 cut(s) 184, 242, 372, 759
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 703
Psp5II RGGWCCY 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 6 cut(s) 89, 97, 196, 351, 380, 460
PspPI GGNCC 4 cut(s) 95, 194, 405, 459
PspPPI RGGWCCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 3 cut(s) 46, 173, 518
RsaNI GTAC 3 cut(s) 45, 172, 517
RseI CAYNNNNRTG 1 cut(s) 767
SacI GAGCTC 1 cut(s) 703
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 183, 241, 371, 758
Sau3AI GATC 1 cut(s) 636
Sau96I GGNCC 4 cut(s) 95, 194, 405, 459
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 404, 445, 810
SduI GDGCHC 2 cut(s) 703, 774
SetI ASST 9 cut(s) 10, 75, 97, 314, 342, 375, 495, 703, 723
SfaNI GCATC 1 cut(s) 295
SfiI GGCCNNNNNGGCC 1 cut(s) 413
SinI GGWCC 2 cut(s) 95, 459
SmiMI CAYNNNNRTG 1 cut(s) 767
Sse9I AATT 7 cut(s) 124, 164, 225, 230, 343, 532, 577
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 8 cut(s) 19, 153, 183, 269, 284, 362, 423, 668
SstI GAGCTC 1 cut(s) 703
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 402, 443, 808
StyI CCWWGG 2 cut(s) 91, 408
TaqI TCGA 3 cut(s) 25, 296, 674
TasI AATT 7 cut(s) 124, 164, 225, 230, 343, 532, 577
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 3 cut(s) 240, 370, 757
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 75, 831
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 95, 459
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.