Rh5CG237200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000926
Physical Location & Seq
Reverse (-)
24611964 .. 24614877
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG237200.1

Sequence Viewer

Length: 1182 bp
ATGGATCCCTATTATGAACAAAGACTCAGAGACGAAGTCATTTACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAATCGCCGAAACCCCATTCCCATTCCCAATTCCACAATCCGAGCCACCCCAAATGGCAGACAACCCCAATTGCCCTACCCGATCGCCGCCCAAGAAGGCCCCACCACCAAGAGGAAGACAAGAACCGAAATTGAATTGCCCAGCAGCAACAAGAAGCCCTCGCAACCCGACCCGCGTTGGGAATGCCCGGGTCCGGCCTCGAACGATGACTCAACCTCTGAGTGGCCCTCATCTGGGTGGCCAGTGACTTCAGCCAAGCTCAATTTGGCTCCGGCGTCGGCGGACGAGCAGTTGAGGCACCACGCGCTTCGGCTACACAACCGGGCCTTGGAGGCCTGCGGCGGATTCTTTAAGGGCAATGCCAGGTCGGGTAGTGGGTCCGAGAGTGAGGAGGAAGAAGAGGATTGCAAGGTTGGAGATGAGGAGAATGAGGAGTACAAGTTTTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATAGTGGTGAGTTCCATTGCTTGGTGTGTGGTGGGTTGGGGAAGACGAAGAAGATCAAGGGTTGTGTCGGGCTTGTTCACCACGCGGTTTCGATAAGCAAGACGAAGAAGAAGAGAGCTCATAGGGCTTTTGCTCAGGTTGTGTGTAGGGTTTTAGGGTGGGATTTTGACCGGCTGCCCATTGTTGTGCTCAAAGGCGAAAGGCTCAGTTTTTATTTGGCAAAACCGGGCGATGAACGGGGTGAGAGTGAGGTAAATGCTGGTGCTAGTGAGGCTGTTTCGGGTGCTGTTAAGGACAATGTGGGAGATGAAAGGGATGGTAATGCCGAGTCAGGTGAAAAGGAAGCATCTAATGGAGACCTAATGATTTGTCAGGTTGAAGTTTCGGAAAATGCTGATGATTACAAGCATGATTTAGTTGTTTCCAAAGAAACATTGGATACTATCAGTGGATATACTGGTGAAATAGGCTCAAAGGTGGAACCTGAGGTAGCCTTAGGTGATGGAACACCAATGGCGTGTGAGTTGCAGGCTGAACCTGAGAAAAATGTGGATGGTCCCAATGATGATTTAAATGTCTTTTTGGAGAATTTAGAACCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.24

Weight (kDa)

4.96

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 60, 372
AccB7I CCANNNNNTGG 1 cut(s) 598
AccII CGCG 3 cut(s) 250, 380, 662
AciI CCGC 6 cut(s) 162, 248, 356, 414, 417, 662
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 526, 1165
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 8 cut(s) 186, 253, 268, 297, 308, 309, 403, 598
AgsI TTSAA 3 cut(s) 209, 526, 956
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 2 cut(s) 334, 695
AluI AGCT 2 cut(s) 334, 695
Alw21I GWGCWC 2 cut(s) 697, 768
Alw26I GTCTC 2 cut(s) 24, 927
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 6 cut(s) 172, 270, 299, 314, 399, 408
ApeKI GCWGC 2 cut(s) 219, 751
ApoI RAATTY 2 cut(s) 526, 1165
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 7 cut(s) 68, 173, 266, 300, 399, 453, 1133
AsuC2I CCSGG 4 cut(s) 263, 264, 398, 804
AsuHPI GGTGA 6 cut(s) 596, 647, 830, 923, 1049, 1088
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 4 cut(s) 68, 266, 453, 1133
AxyI CCTNAGG 2 cut(s) 1062, 1072
BalI TGGCCA 1 cut(s) 316
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 60, 372
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 2 cut(s) 197, 626
Bbv12I GWGCWC 2 cut(s) 697, 768
BbvI GCAGC 2 cut(s) 231, 738
BccI CCATC 3 cut(s) 887, 1073, 1124
BciT130I CCWGG 1 cut(s) 439
BciVI GTATCC 1 cut(s) 1009
BcnI CCSGG 4 cut(s) 263, 264, 398, 804
BcoDI GTCTC 2 cut(s) 24, 927
BfaI CTAG 1 cut(s) 843
BfuI GTATCC 1 cut(s) 1009
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 4 cut(s) 162, 220, 415, 752
BlsI GCNGC 4 cut(s) 163, 221, 416, 753
Bme1390I CCNGG 5 cut(s) 263, 264, 398, 439, 804
Bme18I GGWCC 4 cut(s) 68, 266, 453, 1133
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 7 cut(s) 68, 173, 266, 300, 399, 453, 1133
BmrFI CCNGG 5 cut(s) 263, 264, 398, 439, 804
BmsI GCATC 1 cut(s) 932
BpiI GAAGAC 2 cut(s) 197, 626
BplI GAGNNNNNCTC 2 cut(s) 287, 319
Bpu10I CCTNAGC 1 cut(s) 711
BpuMI CCSGG 4 cut(s) 263, 264, 398, 804
BsaHI GRCGYC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 927
BsaJI CCNNGG 3 cut(s) 64, 262, 402
BsaXI ACNNNNNCTCC 4 cut(s) 500, 530, 533, 563
Bsc4I CCNNNNNNNGG 8 cut(s) 186, 253, 268, 297, 308, 309, 403, 598
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 2 cut(s) 317, 1039
Bse21I CCTNAGG 2 cut(s) 1062, 1072
Bse3DI GCAATG 2 cut(s) 439, 592
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 64, 262, 402
BseGI GGATG 2 cut(s) 898, 1135
BseLI CCNNNNNNNGG 8 cut(s) 186, 253, 268, 297, 308, 309, 403, 598
BseMI GCAATG 2 cut(s) 439, 592
BseMII CTCAG 6 cut(s) 40, 285, 725, 796, 1053, 1107
BseNI ACTGG 2 cut(s) 317, 1039
BseRI GAGGAG 5 cut(s) 479, 512, 521, 554, 568
BseXI GCAGC 2 cut(s) 231, 738
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 3 cut(s) 250, 380, 662
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 6 cut(s) 174, 272, 301, 316, 401, 410
BshNI GGYRCC 2 cut(s) 60, 372
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 697, 768
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 6 cut(s) 263, 269, 347, 397, 748, 803
BslFI GGGAC 2 cut(s) 54, 1119
BslI CCNNNNNNNGG 8 cut(s) 186, 253, 268, 297, 308, 309, 403, 598
BsmAI GTCTC 2 cut(s) 24, 927
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 54, 1119
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 6 cut(s) 174, 272, 301, 316, 401, 410
Bso31I GGTCTC 1 cut(s) 927
BsoBI CYCGRG 1 cut(s) 262
Bsp1286I GDGCHC 2 cut(s) 697, 768
Bsp143I GATC 3 cut(s) 4, 156, 630
BspACI CCGC 6 cut(s) 162, 248, 356, 414, 417, 662
BspANI GGCC 6 cut(s) 174, 272, 301, 316, 401, 410
BspCNI CTCAG 6 cut(s) 39, 286, 724, 795, 1054, 1108
BspFNI CGCG 3 cut(s) 250, 380, 662
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 60, 372
BspTNI GGTCTC 1 cut(s) 927
BsrDI GCAATG 2 cut(s) 439, 592
BsrFI RCCGGY 1 cut(s) 747
BsrI ACTGG 2 cut(s) 317, 1039
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 3 cut(s) 64, 262, 402
BssMI GATC 3 cut(s) 4, 156, 630
BssNI GRCGYC 1 cut(s) 350
BssT1I CCWWGG 2 cut(s) 64, 402
Bst2UI CCWGG 1 cut(s) 439
Bst6I CTCTTC 2 cut(s) 468, 683
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 412, 1107
BstDEI CTNAG 7 cut(s) 26, 294, 711, 782, 1062, 1072, 1116
BstF5I GGATG 2 cut(s) 898, 1135
BstFNI CGCG 3 cut(s) 250, 380, 662
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 3 cut(s) 7, 159, 633
BstMAI GTCTC 2 cut(s) 24, 927
BstMBI GATC 3 cut(s) 4, 156, 630
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 5 cut(s) 370, 379, 407, 701, 848
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 5 cut(s) 261, 262, 396, 437, 802
BstUI CGCG 3 cut(s) 250, 380, 662
BstV1I GCAGC 2 cut(s) 231, 738
BstV2I GAAGAC 2 cut(s) 197, 626
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 2 cut(s) 1062, 1072
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 6 cut(s) 174, 272, 301, 316, 401, 410
BtgZI GCGATG 1 cut(s) 822
BtsCI GGATG 2 cut(s) 898, 1135
BtsIMutI CAGTG 2 cut(s) 324, 1030
Cac8I GCNNGC 2 cut(s) 412, 1107
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 7 cut(s) 68, 173, 266, 300, 399, 453, 1133
Cfr9I CCCGGG 1 cut(s) 262
CseI GACGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 511
CviAII CATG 1 cut(s) 986
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 7 cut(s) 26, 294, 711, 782, 1062, 1072, 1116
DpnI GATC 3 cut(s) 6, 158, 632
DpnII GATC 3 cut(s) 4, 156, 630
DraI TTTAAA 1 cut(s) 1149
EaeI YGGCCR 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 468, 683
EarI CTCTTC 2 cut(s) 468, 683
EciI GGCGGA 2 cut(s) 371, 432
Ecl136II GAGCTC 1 cut(s) 695
Eco130I CCWWGG 2 cut(s) 64, 402
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 927
Eco47I GGWCC 4 cut(s) 68, 266, 453, 1133
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 2 cut(s) 1062, 1072
Eco88I CYCGRG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 695
EcoO109I RGGNCCY 2 cut(s) 68, 173
EcoRII CCWGG 1 cut(s) 437
EcoT14I CCWWGG 2 cut(s) 64, 402
EcoT38I GRGCYC 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 64, 402
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 989
FaiI YATR 4 cut(s) 15, 699, 987, 1032
FaqI GGGAC 2 cut(s) 54, 1119
FatI CATG 1 cut(s) 985
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 162, 220, 415, 752
FokI GGATG 2 cut(s) 905, 1142
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 4 cut(s) 162, 220, 415, 752
FspBI CTAG 1 cut(s) 843
GlaI GCGC 1 cut(s) 381
GluI GCNGC 4 cut(s) 162, 220, 415, 752
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 6 cut(s) 174, 272, 301, 316, 401, 410
HapII CCGG 6 cut(s) 263, 269, 347, 397, 748, 803
HgaI GACGC 1 cut(s) 339
HhaI GCGC 1 cut(s) 382
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 989
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HinfI GANTC 4 cut(s) 24, 284, 420, 905
HpaII CCGG 6 cut(s) 263, 269, 347, 397, 748, 803
HphI GGTGA 6 cut(s) 596, 647, 830, 923, 1049, 1088
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 5 cut(s) 29, 116, 295, 457, 964
Hpy8I GTNNAC 1 cut(s) 655
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 483, 1105
HpyF10VI GCNNNNNNNGC 5 cut(s) 370, 379, 407, 701, 848
HpyF3I CTNAG 7 cut(s) 26, 294, 711, 782, 1062, 1072, 1116
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 989
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 4, 156, 630
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 231, 738
LweI GCATC 1 cut(s) 932
MaeI CTAG 1 cut(s) 843
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 6, 158, 632
MboI GATC 3 cut(s) 4, 156, 630
MboII GAAGA 9 cut(s) 202, 482, 485, 631, 637, 640, 694, 697, 700
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 697, 768
MlsI TGGCCA 1 cut(s) 316
MluCI AATT 8 cut(s) 103, 143, 204, 209, 337, 526, 571, 1165
MluNI TGGCCA 1 cut(s) 316
MlyI GAGTC 3 cut(s) 18, 278, 914
MmeI TCCRAC 1 cut(s) 469
Mox20I TGGCCA 1 cut(s) 316
MscI TGGCCA 1 cut(s) 316
MseI TTAA 3 cut(s) 426, 867, 1148
MslI CAYNNNNRTG 2 cut(s) 310, 761
Msp20I TGGCCA 1 cut(s) 316
MspI CCGG 6 cut(s) 263, 269, 347, 397, 748, 803
MspR9I CCNGG 5 cut(s) 263, 264, 398, 439, 804
MunI CAATTG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 3 cut(s) 250, 380, 662
MwoI GCNNNNNNNGC 5 cut(s) 370, 379, 407, 701, 848
NciI CCSGG 4 cut(s) 263, 264, 398, 804
NdeII GATC 3 cut(s) 4, 156, 630
NlaIII CATG 1 cut(s) 989
NmeAIII GCCGAG 1 cut(s) 928
NmuCI GTSAC 1 cut(s) 319
PceI AGGCCT 1 cut(s) 410
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 420
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 4 cut(s) 163, 221, 416, 753
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 3 cut(s) 18, 278, 913
PpsI GAGTC 3 cut(s) 18, 278, 913
PpuMI RGGWCCY 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 697
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 437
PspPI GGNCC 7 cut(s) 68, 173, 266, 300, 399, 453, 1133
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 35
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 2 cut(s) 310, 761
SacI GAGCTC 1 cut(s) 697
SaqAI TTAA 3 cut(s) 426, 867, 1148
SatI GCNGC 4 cut(s) 162, 220, 415, 752
Sau3AI GATC 3 cut(s) 4, 156, 630
Sau96I GGNCC 7 cut(s) 68, 173, 266, 300, 399, 453, 1133
SchI GAGTC 3 cut(s) 18, 278, 914
ScrFI CCNGG 5 cut(s) 263, 264, 398, 439, 804
SduI GDGCHC 2 cut(s) 697, 768
SfaNI GCATC 1 cut(s) 932
SfiI GGCCNNNNNGGCC 1 cut(s) 407
SinI GGWCC 4 cut(s) 68, 266, 453, 1133
SmaI CCCGGG 1 cut(s) 264
SmiI ATTTAAAT 1 cut(s) 1149
SmiMI CAYNNNNRTG 2 cut(s) 310, 761
Sse9I AATT 8 cut(s) 103, 143, 204, 209, 337, 526, 571, 1165
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 6 cut(s) 162, 248, 356, 414, 417, 662
SspMI CTAG 1 cut(s) 843
SstI GAGCTC 1 cut(s) 697
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 5 cut(s) 261, 262, 396, 437, 802
StyI CCWWGG 2 cut(s) 64, 402
SwaI ATTTAAAT 1 cut(s) 1149
TaqI TCGA 2 cut(s) 275, 668
TasI AATT 8 cut(s) 103, 143, 204, 209, 337, 526, 571, 1165
TatI WGTACW 1 cut(s) 510
TauI GCSGC 2 cut(s) 164, 417
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 3 cut(s) 426, 867, 1148
Tru9I TTAA 3 cut(s) 426, 867, 1148
TscAI CASTG 2 cut(s) 324, 1030
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 219, 751
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 30, 825, 900
TspMI CCCGGG 1 cut(s) 262
TspRI CASTG 2 cut(s) 324, 1030
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 598
VpaK11BI GGWCC 4 cut(s) 68, 266, 453, 1133
XapI RAATTY 2 cut(s) 526, 1165
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 1009
XmaI CCCGGG 1 cut(s) 262
XspI CTAG 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.