Rh2CG352200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000926
Physical Location & Seq
Reverse (-)
47707848 .. 47708300
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG352200.1

Sequence Viewer

Length: 453 bp
ATGGATCCCTATTATGAACAAAGACTCAGAGATGAAGTCATTTACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAATCGCCGAAACCCCATTCCCTTCCCCAATTCCACAATCCGAGCCACCCCAAATGGCGGAGACCCCCAATTGCCGTACCCGTTCACCGCCCAAGAACGCCCCACCACCAAGAGGAAGGCAAGAACCGAAATTGAATTGCCCAACAGCAACAAGAAGCCCAAGCAACCCAACCCGCGTTGGGAATGCCCAGGTCCGGCCAAGAACGATGACTCAACCTCTGGGTGGCCCTCATCTAGGTGGCCGGTGAGTTCAGCCAAGCTCAATATGGCTCCGGCGTTGGCGGAAGAGCAGTTGAGGCACCACGCGCTTCGGCTACACAACCAGGCCTTGGAGGCCTGCGGCGGATTCTTTAAGGGCAATGCCGGGTCGGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

9.59

Isoelectric Point (pI)

77.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 60, 372
AccB7I CCANNNNNTGG 1 cut(s) 403
AccII CGCG 2 cut(s) 250, 380
AciI CCGC 6 cut(s) 132, 162, 248, 356, 414, 417
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 270, 314
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 7 cut(s) 131, 186, 253, 268, 297, 309, 403
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 2 cut(s) 262, 396
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 12
AoxI GGCC 5 cut(s) 270, 299, 314, 399, 408
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 68, 266, 300
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 151, 331
AvaII GGWCC 2 cut(s) 68, 266
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 60, 372
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 264, 398
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 309
BglI GCCNNNNNGGC 2 cut(s) 407, 443
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 3 cut(s) 264, 398, 439
Bme18I GGWCC 2 cut(s) 68, 266
BmgT120I GGNCC 3 cut(s) 68, 266, 300
BmiI GGNNCC 5 cut(s) 6, 62, 70, 345, 374
BmrFI CCNGG 3 cut(s) 264, 398, 439
BpuMI CCSGG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 64, 262, 402
Bsc4I CCNNNNNNNGG 7 cut(s) 131, 186, 253, 268, 297, 309, 403
Bse118I RCCGGY 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 2 cut(s) 264, 398
BseDI CCNNGG 3 cut(s) 64, 262, 402
BseLI CCNNNNNNNGG 7 cut(s) 131, 186, 253, 268, 297, 309, 403
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 250, 380
BshFI GGCC 5 cut(s) 272, 301, 316, 401, 410
BshNI GGYRCC 2 cut(s) 60, 372
BsiSI CCGG 4 cut(s) 269, 317, 347, 438
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 7 cut(s) 131, 186, 253, 268, 297, 309, 403
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 5 cut(s) 272, 301, 316, 401, 410
Bso31I GGTCTC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 6 cut(s) 132, 162, 248, 356, 414, 417
BspANI GGCC 5 cut(s) 272, 301, 316, 401, 410
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 2 cut(s) 250, 380
BspLI GGNNCC 5 cut(s) 6, 62, 70, 345, 374
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 2 cut(s) 60, 372
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 64, 262, 402
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 2 cut(s) 64, 402
Bst2UI CCWGG 2 cut(s) 264, 398
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 250, 380
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 4 cut(s) 370, 379, 407, 443
BstNI CCWGG 2 cut(s) 264, 398
BstSCI CCNGG 3 cut(s) 262, 396, 437
BstUI CGCG 2 cut(s) 250, 380
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 5 cut(s) 272, 301, 316, 401, 410
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 68, 266, 300
Csp6I GTAC 1 cut(s) 151
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 2 cut(s) 270, 314
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
EciI GGCGGA 3 cut(s) 147, 371, 432
Eco130I CCWWGG 2 cut(s) 64, 402
Eco147I AGGCCT 2 cut(s) 401, 410
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 68, 266
EcoNI CCTNNNNNAGG 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 262, 396
EcoT14I CCWWGG 2 cut(s) 64, 402
ErhI CCWWGG 2 cut(s) 64, 402
FaiI YATR 2 cut(s) 15, 341
FaqI GGGAC 1 cut(s) 54
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 415
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 415
HaeIII GGCC 5 cut(s) 272, 301, 316, 401, 410
HapII CCGG 4 cut(s) 269, 317, 347, 438
HhaI GCGC 1 cut(s) 382
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HinfI GANTC 3 cut(s) 24, 284, 420
HpaII CCGG 4 cut(s) 269, 317, 347, 438
HphI GGTGA 2 cut(s) 151, 331
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 29, 116
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 106, 184
HpyF10VI GCNNNNNNNGC 4 cut(s) 370, 379, 407, 443
HpyF3I CTNAG 1 cut(s) 26
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 349
MaeI CTAG 1 cut(s) 309
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 371
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 103, 143, 204, 209
MlyI GAGTC 2 cut(s) 18, 278
MnlI CCTC 6 cut(s) 56, 180, 301, 313, 363, 400
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 310
MspI CCGG 4 cut(s) 269, 317, 347, 438
MspR9I CCNGG 3 cut(s) 264, 398, 439
MunI CAATTG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 2 cut(s) 264, 398
MvnI CGCG 2 cut(s) 250, 380
MwoI GCNNNNNNNGC 4 cut(s) 370, 379, 407, 443
NciI CCSGG 1 cut(s) 439
NdeII GATC 1 cut(s) 4
NlaIV GGNNCC 5 cut(s) 6, 62, 70, 345, 374
PceI AGGCCT 2 cut(s) 401, 410
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 420
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 2 cut(s) 18, 278
PpsI GAGTC 2 cut(s) 18, 278
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 262, 396
PspGI CCWGG 2 cut(s) 262, 396
PspN4I GGNNCC 5 cut(s) 6, 62, 70, 345, 374
PspPI GGNCC 3 cut(s) 68, 266, 300
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 3 cut(s) 68, 266, 300
SchI GAGTC 2 cut(s) 18, 278
ScrFI CCNGG 3 cut(s) 264, 398, 439
SetI ASST 6 cut(s) 48, 70, 268, 293, 314, 336
SfiI GGCCNNNNNGGCC 1 cut(s) 407
SinI GGWCC 2 cut(s) 68, 266
SmiMI CAYNNNNRTG 1 cut(s) 310
Sse9I AATT 4 cut(s) 103, 143, 204, 209
SseBI AGGCCT 2 cut(s) 401, 410
SsiI CCGC 6 cut(s) 132, 162, 248, 356, 414, 417
SspMI CTAG 1 cut(s) 309
StuI AGGCCT 2 cut(s) 401, 410
StyD4I CCNGG 3 cut(s) 262, 396, 437
StyI CCWWGG 2 cut(s) 64, 402
TasI AATT 4 cut(s) 103, 143, 204, 209
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 30, 48
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 2 cut(s) 68, 266
XagI CCTNNNNNAGG 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.