Rh7DG204700

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000926
Physical Location & Seq
Forward (+)
19394271 .. 19396774
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG204700.1

Sequence Viewer

Length: 210 bp
ATGGAAGGTCATTCTCCAGTCGAAAGACTCTTAGAGATATATGACCATCATATCTGGAAGGAGTTGGAAAAAGTTGATGCTTTTGGACCAGAGAGCTCTTTGAAAGATGACTGTACAGATAAAAGCATAGAAAGCCTTGATGAGGGAAAGACAGTATTAATGAAGGAAGCAATTGGAGAAGAAGCAAAGGATGCATTGAACACGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.76

Weight (kDa)

4.5

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 103, 199
AjiI CACGTC 1 cut(s) 204
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 98
AseI ATTAAT 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 98
BccI CCATC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 86
BmsI GCATC 2 cut(s) 67, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 113, 154
BstAPI GCANNNNNTGC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 31
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 132, 191
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 2 cut(s) 96, 135
CviKI_1 RGCY 2 cut(s) 96, 135
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 98
FaiI YATR 5 cut(s) 40, 42, 51, 128, 208
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 98
HinfI GANTC 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 52, 157
HpyCH4III ACNGT 2 cut(s) 113, 154
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 191
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 203
LpnPI CCDG 3 cut(s) 30, 40, 102
LweI GCATC 2 cut(s) 67, 181
MaeII ACGT 1 cut(s) 203
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 171
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 1 cut(s) 136
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 1 cut(s) 158
MunI CAATTG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 132, 191
NsiI ATGCAT 1 cut(s) 196
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PshBI ATTAAT 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 21
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 10, 98, 206
SfaNI GCATC 2 cut(s) 67, 181
SgeI CNNG 4 cut(s) 29, 67, 101, 149
SinI GGWCC 1 cut(s) 86
Sse9I AATT 1 cut(s) 171
SstI GAGCTC 1 cut(s) 98
TaaI ACNGT 2 cut(s) 113, 154
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 86
VspI ATTAAT 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.