RLG00000033263

Polynucleotide kinase 3 phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000926
Physical Location & Seq
Reverse (-)
25074672 .. 25077776
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033263

Sequence Viewer

Length: 876 bp
ATGTCTTCTTCTTCTTCTTCGACTCAAGTGGCTGCCAATGTCGAAGCCGAGTACGCCAAGTCCGGCAAGTCCTCGTGCAAGAAGTGCTCGGAACCAATCGAGAAGAAAGCTCTGAGGCTGGGCACCAAAGACGCGCGTGGTTATACCAAGTGGCACCACTTGGGTTGCTTCAGTTTTGTGTCCGAGCCGGTCGCTTCGGTTGACAAGATTAAAGGGTTTCAGTCTCTCAAGAGTAGTGATCAGGAAGCTTTGAAGGATGAATTTGAGAAATCTAAAGAGAAGGATTCAAATGGAAAGAAAAGTTCTAAAAATCGAAAGGTTCATGAAGTAAATCATGAAGCTGAAGATGAGAATGTAGGGGAAATGAAGTTGAAGAAATCAAAGGATTCTTCTTCGACCCATGTCGAAGCCGAGTACGCCAAGTCCAGCAAGTCCTCGTGCAAGAAGTGCTCGAAACCGATCGAGAAGAAAGCTCTGAGGCTGGGCACCAAAGACGCGCGTGGTTATACCAAGTGGCACCACTTGGGTTGCTTCTCTTTTGGGTCTGAGCCGGTTGCTTCGATTGACAAGATAAAAGGATTTCATAGTGATCAGGAAGCTTTGAAGAATTTGGTGGATGAATTTGAGAAATCTAAAGAGGATTCAAATGGTAAGAGAAGTTCTCAAAAACGGAAGGTTCTTGAATTAGATGAAGATGAAGATGAAGAGGAAGATGAAGATGAAGTAGGGGAAAGGGAGTTGAAGAAAGTGAAGGTCTTGCTCGTTCCATTGCAATGGAAGGCTATTACCGCTGTTTGCTTCACGATGGAATGGAGGCTCTGTCTTTCACGACGGCTACTGGGAGTTCTTTTAGGCCTCTTTGTAATTGCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

292

Amino Acids

32.68

Weight (kDa)

8.59

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-PARP PF00645 17 - 87 4.3e-17 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
zf-PARP PF00645 138 - 186 6.5e-13 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 122, 153, 485, 516
AccII CGCG 4 cut(s) 134, 136, 497, 499
AciI CCGC 1 cut(s) 789
AcsI RAATTY 3 cut(s) 260, 607, 620
AcuI CTGAAG 2 cut(s) 154, 363
AfaI GTAC 2 cut(s) 53, 416
AgsI TTSAA 7 cut(s) 253, 288, 373, 604, 645, 683, 742
AluBI AGCT 5 cut(s) 110, 248, 341, 473, 599
AluI AGCT 5 cut(s) 110, 248, 341, 473, 599
Alw21I GWGCWC 2 cut(s) 89, 452
Alw26I GTCTC 1 cut(s) 228
AoxI GGCC 1 cut(s) 853
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 3 cut(s) 260, 607, 620
AspLEI GCGC 2 cut(s) 136, 499
BaeGI GKGCMC 2 cut(s) 125, 488
BanI GGYRCC 4 cut(s) 122, 153, 485, 516
BauI CACGAG 2 cut(s) 73, 436
Bbv12I GWGCWC 2 cut(s) 89, 452
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 799
BceAI ACGGC 1 cut(s) 848
BclI TGATCA 2 cut(s) 238, 589
BcoDI GTCTC 1 cut(s) 228
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmiI GGNNCC 5 cut(s) 93, 124, 155, 487, 518
BmrI ACTGGG 1 cut(s) 848
BmuI ACTGGG 1 cut(s) 848
BoxI GACNNNNGTC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpuEI CTTGAG 2 cut(s) 9, 212
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bse118I RCCGGY 2 cut(s) 187, 550
Bse1I ACTGG 1 cut(s) 843
Bse3DI GCAATG 2 cut(s) 767, 779
BseGI GGATG 2 cut(s) 262, 622
BseMI GCAATG 2 cut(s) 767, 779
BseMII CTCAG 3 cut(s) 104, 467, 537
BseNI ACTGG 1 cut(s) 843
BseSI GKGCMC 2 cut(s) 125, 488
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 2 cut(s) 118, 481
Bsh1236I CGCG 4 cut(s) 134, 136, 497, 499
Bsh1285I CGRYCG 2 cut(s) 192, 462
BshFI GGCC 1 cut(s) 855
BshNI GGYRCC 4 cut(s) 122, 153, 485, 516
BsiEI CGRYCG 2 cut(s) 192, 462
BsiHKAI GWGCWC 2 cut(s) 89, 452
BsiSI CCGG 3 cut(s) 63, 188, 551
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 1 cut(s) 855
Bsp1286I GDGCHC 4 cut(s) 89, 125, 452, 488
Bsp143I GATC 3 cut(s) 238, 459, 589
BspACI CCGC 1 cut(s) 789
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 3 cut(s) 105, 468, 538
BspFNI CGCG 4 cut(s) 134, 136, 497, 499
BspHI TCATGA 2 cut(s) 322, 334
BspLI GGNNCC 5 cut(s) 93, 124, 155, 487, 518
BspT107I GGYRCC 4 cut(s) 122, 153, 485, 516
BsrDI GCAATG 2 cut(s) 767, 779
BsrFI RCCGGY 2 cut(s) 187, 550
BsrI ACTGG 1 cut(s) 843
BssAI RCCGGY 2 cut(s) 187, 550
BssMI GATC 3 cut(s) 238, 459, 589
BssSI CACGAG 2 cut(s) 73, 436
Bst2BI CACGAG 2 cut(s) 73, 436
Bst6I CTCTTC 1 cut(s) 699
BstAPI GCANNNNNTGC 2 cut(s) 84, 447
BstDEI CTNAG 3 cut(s) 113, 476, 546
BstF5I GGATG 2 cut(s) 262, 622
BstFNI CGCG 4 cut(s) 134, 136, 497, 499
BstHHI GCGC 2 cut(s) 136, 499
BstKTI GATC 3 cut(s) 241, 462, 592
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 238, 459, 589
BstMCI CGRYCG 2 cut(s) 192, 462
BstMWI GCNNNNNNNGC 5 cut(s) 53, 84, 416, 447, 788
BstPAI GACNNNNGTC 1 cut(s) 401
BstSLI GKGCMC 2 cut(s) 125, 488
BstUI CGCG 4 cut(s) 134, 136, 497, 499
BstV1I GCAGC 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 774
BsuRI GGCC 1 cut(s) 855
BtsCI GGATG 2 cut(s) 262, 622
CciI TCATGA 2 cut(s) 322, 334
CfoI GCGC 2 cut(s) 136, 499
Cfr10I RCCGGY 2 cut(s) 187, 550
CseI GACGC 2 cut(s) 140, 503
Csp6I GTAC 2 cut(s) 52, 415
CspCI CAANNNNNGTGG 4 cut(s) 146, 181, 509, 544
CviAII CATG 3 cut(s) 323, 335, 401
CviQI GTAC 2 cut(s) 52, 415
DdeI CTNAG 3 cut(s) 113, 476, 546
DpnI GATC 3 cut(s) 240, 461, 591
DpnII GATC 3 cut(s) 238, 459, 589
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco147I AGGCCT 1 cut(s) 855
Eco57I CTGAAG 2 cut(s) 154, 363
FaeI CATG 3 cut(s) 326, 338, 404
FaiI YATR 6 cut(s) 144, 324, 336, 402, 507, 585
FatI CATG 3 cut(s) 322, 334, 400
FbaI TGATCA 2 cut(s) 238, 589
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 269, 629
Fsp4HI GCNGC 1 cut(s) 33
GlaI GCGC 2 cut(s) 135, 498
GluI GCNGC 1 cut(s) 33
GsaI CCCAGC 2 cut(s) 122, 485
HaeIII GGCC 1 cut(s) 855
HapII CCGG 3 cut(s) 63, 188, 551
HgaI GACGC 2 cut(s) 140, 503
HhaI GCGC 2 cut(s) 136, 499
Hin1II CATG 3 cut(s) 326, 338, 404
Hin6I GCGC 2 cut(s) 134, 497
HinP1I GCGC 2 cut(s) 134, 497
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 246, 597
HinfI GANTC 4 cut(s) 22, 284, 386, 641
HpaII CCGG 3 cut(s) 63, 188, 551
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 5 cut(s) 91, 114, 184, 477, 547
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 834
HpyAV CCTTC 5 cut(s) 247, 274, 667, 745, 772
HpyCH4V TGCA 3 cut(s) 78, 441, 772
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 84, 416, 447, 788
HpyF3I CTNAG 3 cut(s) 113, 476, 546
Hsp92II CATG 3 cut(s) 326, 338, 404
HspAI GCGC 2 cut(s) 134, 497
Ksp22I TGATCA 2 cut(s) 238, 589
Kzo9I GATC 3 cut(s) 238, 459, 589
LpnPI CCDG 9 cut(s) 76, 104, 201, 227, 439, 467, 564, 578, 824
Lsp1109I GCAGC 1 cut(s) 19
MalI GATC 3 cut(s) 240, 461, 591
MboI GATC 3 cut(s) 238, 459, 589
MhlI GDGCHC 4 cut(s) 89, 125, 452, 488
MluCI AATT 5 cut(s) 260, 607, 620, 683, 864
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 8 cut(s) 82, 108, 445, 471, 631, 700, 807, 866
MseI TTAA 2 cut(s) 210, 874
MslI CAYNNNNRTG 1 cut(s) 772
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 3 cut(s) 63, 188, 551
MvnI CGCG 4 cut(s) 134, 136, 497, 499
MwoI GCNNNNNNNGC 5 cut(s) 53, 84, 416, 447, 788
NdeII GATC 3 cut(s) 238, 459, 589
NlaIII CATG 3 cut(s) 326, 338, 404
NlaIV GGNNCC 5 cut(s) 93, 124, 155, 487, 518
NmeAIII GCCGAG 2 cut(s) 73, 436
PagI TCATGA 2 cut(s) 322, 334
PceI AGGCCT 1 cut(s) 855
PfeI GAWTC 3 cut(s) 284, 386, 641
PkrI GCNGC 1 cut(s) 34
Ple19I CGATCG 1 cut(s) 462
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 401
PspFI CCCAGC 2 cut(s) 118, 481
PspN4I GGNNCC 5 cut(s) 93, 124, 155, 487, 518
PsrI GAACNNNNNNTAC 2 cut(s) 643, 675
PvuI CGATCG 1 cut(s) 462
RsaI GTAC 2 cut(s) 53, 416
RsaNI GTAC 2 cut(s) 52, 415
RseI CAYNNNNRTG 1 cut(s) 772
SaqAI TTAA 2 cut(s) 210, 874
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 238, 459, 589
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 4 cut(s) 89, 125, 452, 488
SetI ASST 8 cut(s) 112, 250, 321, 343, 475, 601, 678, 756
SmiMI CAYNNNNRTG 1 cut(s) 772
SmlI CTYRAG 2 cut(s) 24, 227
SmoI CTYRAG 2 cut(s) 24, 227
Sse9I AATT 5 cut(s) 260, 607, 620, 683, 864
SseBI AGGCCT 1 cut(s) 855
SsiI CCGC 1 cut(s) 789
StuI AGGCCT 1 cut(s) 855
TaqI TCGA 9 cut(s) 20, 42, 99, 313, 395, 405, 452, 462, 560
TasI AATT 5 cut(s) 260, 607, 620, 683, 864
TfiI GAWTC 3 cut(s) 284, 386, 641
Tru1I TTAA 2 cut(s) 210, 874
Tru9I TTAA 2 cut(s) 210, 874
TseI GCWGC 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 685
XapI RAATTY 3 cut(s) 260, 607, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.