Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000926

Physical Location & Seq

Genomic Coordinates Reverse (-)

25229355 .. 25231379

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTGCAGGGTGAGAGTGAGGTAAATGCTGGTGCTAGTGAGGCTGTTTCGGGTGCTGTTAAAGACAATGTGGGAGATGAAAGGGATGGTAATGCCGAGTCAGGTGAAAAGGAAGCATCTAATGGAGACCTAATGATTTGTCAGAAATCTTTGAAAGATGATGATGCAAATCAATGCAAAGAAACCCTTAATAAGGGGATATCAGAAATCAAAGAAGAGAAAGAAGAGGCAATGGATACGCGCAGTGAGCCTGAGTTAAATGTTGACCAGTTGGATAGTGCACTGAAAGACAGTGTGGCAGCTGAAACTGATGCTCCTGCTGAATCTAGTGAAAAGGAGGCATTTGATGATCATCAGTGCAATGGTAAAGAACCAATCATCTGTCAGAGCTCTTTGAAAGATGATGGTACAGATAAAAGCATAGAAAGCCTTGATGAGGGAAAGACAGTATTAATAAAGGAAGCAATTGGAGAAGAAGCAACGGATGCATTGGGTGAACCTGAGGTACGTGCTGGTTCTTGTGAGGGTGTTTTTTGTGTTGGTAAAGACAATGTGGCAGCCGAAAATGGTGCCAATGCTGAATTGGGTGTAAAAGAGGTATTTGATGATCATCAGATTAACAGTGAAAATAAAATGATTTGTCAGAACTTGTTGAAAGATGATGGTACAACAGAAAACACAGAAGCCCTCAACAAGGGAATATCAGAAGTCGAAGCAAACAAAGAAGATGGAGTGGATACAGGGGTTGAAGTTTCGGAAAATGCTGATGATTACAAGCATGATTTAGTTGTTTCCAAAGAAACATTGGATACTACCAGTGGATATACTGGTGAAATAGGCTCAAAGGTGGAACCTGAGGTAGCCTTAGGTGATGGAACACCAATGGCATGTGAGTTGCAGGCTGAACCTGAGAAAAATGTGGATGGTCCCAATGATGATTTAAATGTCTTTTTGGAGAATTTAGAACCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

34.48

Weight (kDa)

4.06

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78810 AT1G78810 AT1G78810
fragaria_vesca	FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260 FvH4_3g18260
malus_domestica	MD11G1264000.v1.1
prunus_persica	Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1 Prupe.4G164500_v2.0.a1
pyrus_communis	pycom11g23250
rosa_chinensis	RchiOBHm_Chr1g0314351 RchiOBHm_Chr1g0357411 RchiOBHm_Chr5g0030881 RchiOBHm_Chr5g0030891 RchiOBHm_Chr7g0196621
rosa_laevigata	RLG00000007052 RLG00000008751 RLG00000033260 RLG00000033263
rosa_multiflora	Rmu_co8438113.1_g000001 Rmu_co8456075.1_g000001 Rmu_sc0001974.1_g000027 Rmu_sc0001974.1_g000028 Rmu_sc0002294.1_g000038
rosa_roxburghii	Rroxscaffold_1G00049380
rosa_rugosa	Rorug01G0364900 Rorug05G0121100 Rorug05G0121200 Rorug05G0121200 Rorug05G0121200 Rorug05G0121300 Rorug05G0121400
rosa_samantha	Rh1AG010400 Rh1AG270600 Rh2CG352200 Rh3CG359400 Rh4AG035000 Rh4BG053800 Rh4CG032500 Rh4DG105900 Rh5AG214200 Rh5AG214300 Rh5AG214400 Rh5BG213400 Rh5CG237200 Rh5CG237300 Rh5CG377800 Rh5DG217800 Rh7DG204700 Rh7DG406500
rosa_wichuraiana	Rw5G019580 Rw5G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AccII	CGCG	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	958
AfaI	GTAC	3 cut(s)	409, 507, 667
AfiI	CCNNNNNNNGG	3 cut(s)	193, 436, 694
AgsI	TTSAA	4 cut(s)	154, 397, 655, 749
AluBI	AGCT	2 cut(s)	302, 390
AluI	AGCT	2 cut(s)	302, 390
Alw21I	GWGCWC	2 cut(s)	283, 392
Alw26I	GTCTC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	299, 557
ApoI	RAATTY	1 cut(s)	958
AseI	ATTAAT	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	926
AsuHPI	GGTGA	5 cut(s)	23, 116, 506, 842, 881
AvaII	GGWCC	1 cut(s)	926
AxyI	CCTNAGG	3 cut(s)	501, 855, 865
BaeGI	GKGCMC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	2 cut(s)	283, 392
BbvI	GCAGC	2 cut(s)	311, 569
BccI	CCATC	6 cut(s)	80, 398, 656, 722, 866, 917
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciVI	GTATCC	3 cut(s)	229, 730, 802
BclI	TGATCA	2 cut(s)	349, 607
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	36, 327
BfuI	GTATCC	3 cut(s)	229, 730, 802
BisI	GCNGC	2 cut(s)	300, 558
BlsI	GCNGC	2 cut(s)	301, 559
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	1 cut(s)	926
BmiI	GGNNCC	3 cut(s)	571, 852, 928
BmsI	GCATC	4 cut(s)	125, 154, 301, 475
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	3 cut(s)	168, 351, 609
BsaI	GGTCTC	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 436, 694
Bse1I	ACTGG	3 cut(s)	268, 816, 832
Bse21I	CCTNAGG	3 cut(s)	501, 855, 865
Bse3DI	GCAATG	2 cut(s)	237, 367
Bse8I	GATNNNNATC	3 cut(s)	168, 351, 609
BseGI	GGATG	3 cut(s)	91, 490, 928
BseJI	GATNNNNATC	3 cut(s)	168, 351, 609
BseLI	CCNNNNNNNGG	3 cut(s)	193, 436, 694
BseMI	GCAATG	2 cut(s)	237, 367
BseMII	CTCAG	4 cut(s)	243, 492, 846, 900
BseNI	ACTGG	3 cut(s)	268, 816, 832
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	311, 569
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	2 cut(s)	283, 392
BslFI	GGGAC	1 cut(s)	912
BslI	CCNNNNNNNGG	3 cut(s)	193, 436, 694
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	912
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	283, 392
Bsp143I	GATC	2 cut(s)	349, 607
BspCNI	CTCAG	4 cut(s)	244, 493, 847, 901
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	571, 852, 928
BspT107I	GGYRCC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	237, 367
BsrI	ACTGG	3 cut(s)	268, 816, 832
BssMI	GATC	2 cut(s)	349, 607
Bst4CI	ACNGT	3 cut(s)	293, 448, 623
Bst6I	CTCTTC	2 cut(s)	210, 219
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	5 cut(s)	252, 501, 855, 865, 909
BstENI	CCTNNNNNAGG	3 cut(s)	191, 434, 692
BstF5I	GGATG	3 cut(s)	91, 490, 928
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	352, 610
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	349, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 247, 426, 485
BstNSI	RCATGY	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	311, 569
Bsu36I	CCTNAGG	3 cut(s)	501, 855, 865
BsuI	GTATCC	3 cut(s)	229, 730, 802
BtsCI	GGATG	3 cut(s)	91, 490, 928
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	6 cut(s)	250, 281, 298, 362, 628, 823
Cac8I	GCNNGC	1 cut(s)	900
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	926
Csp6I	GTAC	3 cut(s)	408, 506, 666
CviAII	CATG	2 cut(s)	779, 888
CviQI	GTAC	3 cut(s)	408, 506, 666
DdeI	CTNAG	5 cut(s)	252, 501, 855, 865, 909
DpnI	GATC	2 cut(s)	351, 609
DpnII	GATC	2 cut(s)	349, 607
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	210, 219
EarI	CTCTTC	2 cut(s)	210, 219
Ecl136II	GAGCTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	926
Eco53kI	GAGCTC	1 cut(s)	390
Eco81I	CCTNAGG	3 cut(s)	501, 855, 865
EcoICRI	GAGCTC	1 cut(s)	390
EcoNI	CCTNNNNNAGG	3 cut(s)	191, 434, 692
EcoRV	GATATC	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	2 cut(s)	782, 891
FaiI	YATR	4 cut(s)	422, 780, 825, 889
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	912
FatI	CATG	2 cut(s)	778, 887
FbaI	TGATCA	2 cut(s)	349, 607
Fnu4HI	GCNGC	2 cut(s)	300, 558
FokI	GGATG	3 cut(s)	98, 497, 935
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	300, 558
FspBI	CTAG	2 cut(s)	36, 327
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	300, 558
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	782, 891
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	98, 323
HphI	GGTGA	5 cut(s)	23, 116, 506, 842, 881
Hpy166II	GTNNAC	3 cut(s)	265, 281, 497
Hpy188I	TCNGA	7 cut(s)	144, 205, 387, 615, 645, 706, 757
Hpy8I	GTNNAC	3 cut(s)	265, 281, 497
HpyCH4III	ACNGT	3 cut(s)	293, 448, 623
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	7 cut(s)	7, 167, 177, 281, 360, 488, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 247, 426, 485
HpyF3I	CTNAG	5 cut(s)	252, 501, 855, 865, 909
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	782, 891
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	2 cut(s)	349, 607
Kzo9I	GATC	2 cut(s)	349, 607
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	311, 569
LweI	GCATC	4 cut(s)	125, 154, 301, 475
MaeI	CTAG	2 cut(s)	36, 327
MaeII	ACGT	1 cut(s)	508
MalI	GATC	2 cut(s)	351, 609
MboI	GATC	2 cut(s)	349, 607
MboII	GAAGA	4 cut(s)	227, 236, 485, 737
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	2 cut(s)	283, 392
MluCI	AATT	3 cut(s)	465, 581, 958
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	6 cut(s)	60, 189, 257, 452, 618, 941
MspA1I	CMGCKG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	4 cut(s)	41, 247, 426, 485
NdeII	GATC	2 cut(s)	349, 607
NlaIII	CATG	2 cut(s)	782, 891
NlaIV	GGNNCC	3 cut(s)	571, 852, 928
NmeAIII	GCCGAG	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	301, 559
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	571, 852, 928
PspPI	GGNCC	1 cut(s)	926
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	3 cut(s)	409, 507, 667
RsaNI	GTAC	3 cut(s)	408, 506, 666
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	6 cut(s)	60, 189, 257, 452, 618, 941
SatI	GCNGC	2 cut(s)	300, 558
Sau3AI	GATC	2 cut(s)	349, 607
Sau96I	GGNCC	1 cut(s)	926
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	283, 392
SfaNI	GCATC	4 cut(s)	125, 154, 301, 475
SinI	GGWCC	1 cut(s)	926
SmiI	ATTTAAAT	1 cut(s)	942
Sse9I	AATT	3 cut(s)	465, 581, 958
SspMI	CTAG	2 cut(s)	36, 327
SstI	GAGCTC	1 cut(s)	392
SwaI	ATTTAAAT	1 cut(s)	942
TaaI	ACNGT	3 cut(s)	293, 448, 623
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	711
TasI	AATT	3 cut(s)	465, 581, 958
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	6 cut(s)	60, 189, 257, 452, 618, 941
Tru9I	TTAA	6 cut(s)	60, 189, 257, 452, 618, 941
TscAI	CASTG	6 cut(s)	250, 288, 298, 362, 628, 823
TseI	GCWGC	2 cut(s)	299, 557
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	6 cut(s)	250, 288, 298, 362, 628, 823
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	926
VspI	ATTAAT	1 cut(s)	452
XagI	CCTNNNNNAGG	3 cut(s)	191, 434, 692
XapI	RAATTY	1 cut(s)	958
XceI	RCATGY	1 cut(s)	891
XcmI	CCANNNNNNNNNTGG	2 cut(s)	580, 802
XspI	CTAG	2 cut(s)	36, 327
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.