Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

8513448 .. 8514666

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGAAAGGAAAGGGAAGAAAGGAAGAGGTCGTGACCAGGGAGTACACTATCAATCTCCACAGGCGCCTCCATAGCTGCACCTTCAAGAAGAAGGCACCCAATGCCATTAAAGAGATCAGGAAGTTTGCATTGAAAGCAATGGGAACAAAGGACGTTAGAGTGGATGTTAAACTCAACAAGCAGATATGGAGCAAAGGTATCCGAGGTCCCCCGAGGAGAATTAGAGTCCGTGTTGCCCGTAAGAGAAACGATGATGAAGATGCCAAGGAAGAGTTCTTCTCCCTCGTCACCGTCGCTGAGATTCCGGCTGAAGGATTATCTGGTTTGGGTACTAAGGTCATTGAAGAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

119

Amino Acids

13.7

Weight (kDa)

9.95

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	10 - 91	3.2e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	66, 97
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	47, 334
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	88, 136, 347
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	209
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BanI	GGYRCC	2 cut(s)	66, 97
BbvI	GCAGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	40
BciVI	GTATCC	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	68, 99, 211
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	4 cut(s)	39, 205, 215, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	4 cut(s)	39, 205, 215, 267
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	64
BshNI	GGYRCC	2 cut(s)	66, 97
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	68, 99, 211
BspT107I	GGYRCC	2 cut(s)	66, 97
BsrDI	GCAATG	1 cut(s)	147
BssECI	CCNNGG	4 cut(s)	39, 205, 215, 267
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	3 cut(s)	21, 267, 345
BstACI	GRCGYC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	300, 336
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 104, 137
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	46, 333
CviJI	RGCY	2 cut(s)	78, 311
CviKI_1	RGCY	2 cut(s)	78, 311
CviQI	GTAC	2 cut(s)	46, 333
DdeI	CTNAG	2 cut(s)	300, 336
DinI	GGCGCC	1 cut(s)	68
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	3 cut(s)	21, 267, 345
EarI	CTCTTC	3 cut(s)	21, 267, 345
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	68
EheI	GGCGCC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	267
FaiI	YATR	2 cut(s)	75, 190
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	79
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	70
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	228, 304
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	3 cut(s)	34, 88, 121
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	88, 94, 308
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	81, 131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 104, 137
HpyF3I	CTNAG	2 cut(s)	300, 336
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	67
HspAI	GCGC	1 cut(s)	67
KasI	GGCGCC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	6 cut(s)	25, 49, 52, 106, 309, 321
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	34, 289
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	7 cut(s)	30, 38, 103, 271, 272, 284, 359
MluCI	AATT	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	22, 80, 200, 210, 296, 346
MseI	TTAA	2 cut(s)	111, 171
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	75, 104, 137
NarI	GGCGCC	1 cut(s)	67
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	3 cut(s)	68, 99, 211
NmuCI	GTSAC	2 cut(s)	34, 289
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	236
PluTI	GGCGCC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	68, 99, 211
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	47, 334
RsaNI	GTAC	2 cut(s)	46, 333
SaqAI	TTAA	2 cut(s)	111, 171
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	7 cut(s)	33, 80, 86, 159, 202, 211, 342
SfaNI	GCATC	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	222
SspDI	GGCGCC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	159
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	111, 171
Tru9I	TTAA	2 cut(s)	111, 171
TseFI	GTSAC	2 cut(s)	34, 289
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	2 cut(s)	34, 289
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.