Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

6194536 .. 6196242

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGTGTTTGGCAGGTAGGGTTGAAGAAGAGGAGAGTGTGAAAATGGTTGAGAAGACTAAGGGACGAAAGGAGGAGGTCGTCACCAGGGAGTTCACCATCAACCTCCACAAGCGCCTCCATGGCTGCACATTCAAGAAGAAGGCTCCCAATGCCATCAAGGAGATCAGGAAGTTTGCCCAGAAGGCAATGGGAACAATTGATGTCAGGGTGGATGTGAAGCTGAACAAGCAAATCTGGAGCAGAGGAATCAGGAGTGTCCCAAGAAGAATCAGGGTTCGCATTGCTCGCAAGAGGAATGATGATGAAGATGCAAAGGAAGAGCTATACTCCCTTGTGACTGTTGCAGAGATCCCAGCTGATGGACTGAAGGGCTTGGGCACCAAGGTCATTGAAGAGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

135

Amino Acids

15.49

Weight (kDa)

9.62

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	26 - 107	4.6e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	362
AclWI	GGATC	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	26, 136, 395
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	223, 325, 359
AluI	AGCT	3 cut(s)	223, 325, 359
AlwI	GGATC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	76, 88
BaeGI	GKGCMC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	3 cut(s)	107, 164, 356
BciT130I	CCWGG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	5
BglI	GCCNNNNNGGC	2 cut(s)	123, 185
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	147, 382
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	87, 121, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse3DI	GCAATG	2 cut(s)	195, 282
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	87, 121, 384
BseGI	GGATG	2 cut(s)	220, 406
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	2 cut(s)	195, 282
BseRI	GAGGAG	2 cut(s)	47, 89
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	78, 245
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	78, 245
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	165, 351
Bsp19I	CCATGG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	147, 382
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	195, 282
BssECI	CCNNGG	3 cut(s)	87, 121, 384
BssMI	GATC	2 cut(s)	165, 351
BssT1I	CCWWGG	2 cut(s)	121, 384
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	3 cut(s)	24, 315, 390
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	220, 406
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	168, 354
BstMBI	GATC	2 cut(s)	165, 351
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 152, 185, 229, 288
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	220, 406
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	117
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	6 cut(s)	126, 146, 223, 325, 359, 375
CviKI_1	RGCY	6 cut(s)	126, 146, 223, 325, 359, 375
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	167, 353
DpnII	GATC	2 cut(s)	165, 351
Eam1104I	CTCTTC	3 cut(s)	24, 315, 390
EarI	CTCTTC	3 cut(s)	24, 315, 390
Eco130I	CCWWGG	2 cut(s)	121, 384
Eco57I	CTGAAG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	121, 384
ErhI	CCWWGG	2 cut(s)	121, 384
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	123, 328
FaqI	GGGAC	2 cut(s)	78, 245
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	118
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	249, 270
HphI	GGTGA	2 cut(s)	76, 88
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188III	TCNNGA	4 cut(s)	136, 169, 238, 253
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	136, 178, 364
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	129, 314, 347
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 152, 185, 229, 288
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	165, 351
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	151, 240
LpnPI	CCDG	9 cut(s)	73, 100, 154, 193, 194, 223, 238, 259, 369
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	82, 337
MalI	GATC	2 cut(s)	167, 353
MboI	GATC	2 cut(s)	165, 351
MboII	GAAGA	8 cut(s)	38, 41, 67, 151, 279, 320, 332, 407
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	8 cut(s)	25, 67, 70, 116, 128, 239, 288, 391
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	123, 152, 185, 229, 288
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	165, 351
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	147, 382
NmuCI	GTSAC	2 cut(s)	82, 337
PciSI	GCTCTTC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	249, 270
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	147, 382
PsuI	RGATCY	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	315
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	165, 351
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	7 cut(s)	19, 81, 108, 225, 327, 361, 390
SfaNI	GCATC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	121, 384
TaaI	ACNGT	1 cut(s)	343
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	249, 270
TseFI	GTSAC	2 cut(s)	82, 337
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	2 cut(s)	82, 337
TspDTI	ATGAA	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.