Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

7108440 .. 7108944

Gene Structure 505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCAAAGATAATTAGTGTCACTATTCTATTGCTTATATTAGGTACTTACAGTGTCGGAGAAAAGTTGATTTGCAGGCAAGACAAGGCCGGAAAAGGAAGAAAGGAGGAGGTCGTTACCAGGGAGTATACCATCAATCTCCACAAGCGCTTGCATGGATGCACCTTTAAAAAGAAGGCTCCAAACGCCATAAAGGAAATCAGGAAGTTTGCTCAAAAGGCCATGGCTACTACTGATGTCAGAGTCAATGTTAAACTCAACAAGCACATTTGGAGCCGTGGGATTCGAAGTGTGCCAAGAAGGGTTTGCGTCCGAATTGCACGAAAGAGAAACGATGAAGAAGATGCCAAGGAAGAGTTCTACTCCCTGGTTACTGTTACAGAGGTTCCGCCAGAGGGATTGAAGGGTTTGGGTACCAAGGTGATTGACGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

9.82

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	37 - 118	1.4e-40	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	1 cut(s)	389
AfaI	GTAC	2 cut(s)	46, 415
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	2 cut(s)	119, 366
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	2 cut(s)	87, 219
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	433
AsuII	TTCGAA	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	1 cut(s)	413
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	121, 368
BfoI	RGCGCY	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	121, 368
BmiI	GGNNCC	4 cut(s)	180, 275, 387, 415
BmrFI	CCNGG	2 cut(s)	121, 368
BmsI	GCATC	2 cut(s)	149, 334
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
Bpu14I	TTCGAA	1 cut(s)	286
BsaJI	CCNNGG	6 cut(s)	120, 222, 277, 348, 366, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	121, 368
BseDI	CCNNGG	6 cut(s)	120, 222, 277, 348, 366, 417
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	89, 221
BshNI	GGYRCC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	395
BsnI	GGCC	2 cut(s)	89, 221
Bsp119I	TTCGAA	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	2 cut(s)	89, 221
BspLI	GGNNCC	4 cut(s)	180, 275, 387, 415
BspT104I	TTCGAA	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	413
BssECI	CCNNGG	6 cut(s)	120, 222, 277, 348, 366, 417
BssNAI	GTATAC	1 cut(s)	129
BssT1I	CCWWGG	3 cut(s)	222, 348, 417
Bst1107I	GTATAC	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	121, 368
Bst4CI	ACNGT	2 cut(s)	53, 376
Bst6I	CTCTTC	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	77, 152
BstDSI	CCRYGG	2 cut(s)	222, 277
BstF5I	GGATG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 218
BstNI	CCWGG	2 cut(s)	121, 368
BstSCI	CCNGG	2 cut(s)	119, 366
BstZ17I	GTATAC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	89, 221
BtgI	CCRYGG	2 cut(s)	222, 277
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	77, 152
CfoI	GCGC	1 cut(s)	150
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	45, 414
CviAII	CATG	2 cut(s)	155, 223
CviJI	RGCY	5 cut(s)	89, 179, 221, 227, 276
CviKI_1	RGCY	5 cut(s)	89, 179, 221, 227, 276
CviQI	GTAC	2 cut(s)	45, 414
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	378
Eco130I	CCWWGG	3 cut(s)	222, 348, 417
Eco47III	AGCGCT	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	119, 366
EcoT14I	CCWWGG	3 cut(s)	222, 348, 417
ErhI	CCWWGG	3 cut(s)	222, 348, 417
FaeI	CATG	2 cut(s)	158, 226
FaiI	YATR	5 cut(s)	38, 129, 156, 191, 224
FatI	CATG	2 cut(s)	154, 222
FblI	GTMKAC	1 cut(s)	128
FokI	GGATG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	89, 221
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	158, 226
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	243, 283
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	59, 242, 314
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	169, 294, 397
HpyCH4III	ACNGT	2 cut(s)	53, 376
HpyCH4V	TGCA	4 cut(s)	75, 154, 162, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 218
Hsp92II	CATG	2 cut(s)	158, 226
HspAI	GCGC	1 cut(s)	148
KpnI	GGTACC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	184, 273
LpnPI	CCDG	8 cut(s)	61, 103, 106, 133, 187, 353, 380, 405
LweI	GCATC	2 cut(s)	149, 334
MaeIII	GTNAC	4 cut(s)	19, 115, 370, 376
MboII	GAAGA	4 cut(s)	111, 350, 353, 365
MluCI	AATT	2 cut(s)	12, 315
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	100, 103, 376, 388
MseI	TTAA	2 cut(s)	168, 252
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	121, 368
MvaI	CCWGG	2 cut(s)	121, 368
MwoI	GCNNNNNNNGC	2 cut(s)	185, 218
NcoI	CCATGG	1 cut(s)	222
NlaIII	CATG	2 cut(s)	158, 226
NlaIV	GGNNCC	4 cut(s)	180, 275, 387, 415
NmuCI	GTSAC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	119, 366
PspGI	CCWGG	2 cut(s)	119, 366
PspN4I	GGNNCC	4 cut(s)	180, 275, 387, 415
RsaI	GTAC	2 cut(s)	46, 415
RsaNI	GTAC	2 cut(s)	45, 414
SaqAI	TTAA	2 cut(s)	168, 252
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	121, 368
SetI	ASST	5 cut(s)	46, 114, 167, 387, 423
SfaNI	GCATC	2 cut(s)	149, 334
SfuI	TTCGAA	1 cut(s)	286
Sse9I	AATT	2 cut(s)	12, 315
SsiI	CCGC	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	119, 366
StyI	CCWWGG	3 cut(s)	222, 348, 417
TaaI	ACNGT	2 cut(s)	53, 376
TaqI	TCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	12, 315
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	168, 252
Tru9I	TTAA	2 cut(s)	168, 252
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.