Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

3572599 .. 3574956

Gene Structure 2358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGCATTCATTTTCTTTGTAGCTCCATTAGATGTAGAAGTGTTTCTTGTTTCTTCAGTAATATATTTGGGACAGAAAATTTGGGACAAGGGCATCTCTTCTTGTTTAGCTCTGCGCCTCCTTCCCCTCATTCTGCGTCGTCTCCAGGTAAAGTTGTAGAAGAAGAGGAGAGTGTGAAAATGGTTGAGAAGACAAAGGGACGAAAGGAAGAGGTGGTGACCAGGGAGTTCACCATCAACCTCCACAAGCGCCTCCATGGCTGCACCTTCAAGAAGAAGGCTCCCAATGCCATCAAGGAGATCAGGAAGTTTGCCCAGAAGGCAATGGGAACCAATGATGTCAGGGTGGATGTCAAGCTCAACAAGCAAATCTGGAGCAGAGGAATCAGGAGTGTCCCCAGAAGAATCAGGGTTCGCATTGCTCGCAAGAGAAATGATGATGAAGATGCAAAGGAAGAGCTATACTCCCTTGTGACTGTTGCCGAGATCCCAGCTGAAGGACTGAAGGGCTTGGGCACCAAGGTCATTGAAGAGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

181

Amino Acids

20.33

Weight (kDa)

9.54

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	71 - 152	1.9e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	3 cut(s)	40, 516, 524
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	271, 530
AjnI	CCWGG	2 cut(s)	145, 221
AluBI	AGCT	5 cut(s)	24, 111, 358, 460, 494
AluI	AGCT	5 cut(s)	24, 111, 358, 460, 494
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
Asp700I	GAANNNNTTC	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	118, 252
AsuHPI	GGTGA	2 cut(s)	223, 229
BaeGI	GKGCMC	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	2 cut(s)	242, 299
BciT130I	CCWGG	2 cut(s)	147, 223
BcoDI	GTCTC	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	253
BglI	GCCNNNNNGGC	2 cut(s)	258, 320
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	147, 223
BmiI	GGNNCC	3 cut(s)	282, 331, 517
BmrFI	CCNGG	2 cut(s)	147, 223
BmsI	GCATC	2 cut(s)	103, 436
BpiI	GAAGAC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	2 cut(s)	129, 394
BsaJI	CCNNGG	3 cut(s)	222, 256, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	330, 417
BseBI	CCWGG	2 cut(s)	147, 223
BseDI	CCNNGG	3 cut(s)	222, 256, 519
BseGI	GGATG	2 cut(s)	355, 541
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	330, 417
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	515
BslFI	GGGAC	4 cut(s)	85, 99, 213, 380
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	4 cut(s)	85, 99, 213, 380
BsmI	GAATGC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	300, 486
Bsp19I	CCATGG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	282, 331, 517
BspPI	GGATC	1 cut(s)	481
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	330, 417
BssECI	CCNNGG	3 cut(s)	222, 256, 519
BssMI	GATC	2 cut(s)	300, 486
BssT1I	CCWWGG	2 cut(s)	256, 519
Bst2UI	CCWGG	2 cut(s)	147, 223
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	5 cut(s)	104, 159, 204, 450, 525
BstC8I	GCNNGC	1 cut(s)	424
BstDSI	CCRYGG	1 cut(s)	256
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	355, 541
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	118, 252
BstKTI	GATC	2 cut(s)	303, 489
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	300, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 287, 320, 364, 423
BstNI	CCWGG	2 cut(s)	147, 223
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	145, 221
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	355, 541
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	2 cut(s)	118, 252
CseI	GACGC	1 cut(s)	126
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	8 cut(s)	24, 111, 261, 281, 358, 460, 494, 510
CviKI_1	RGCY	8 cut(s)	24, 111, 261, 281, 358, 460, 494, 510
DpnI	GATC	2 cut(s)	302, 488
DpnII	GATC	2 cut(s)	300, 486
Eam1104I	CTCTTC	5 cut(s)	104, 159, 204, 450, 525
EarI	CTCTTC	5 cut(s)	104, 159, 204, 450, 525
Eco130I	CCWWGG	2 cut(s)	256, 519
Eco57I	CTGAAG	3 cut(s)	40, 516, 524
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	145, 221
EcoT14I	CCWWGG	2 cut(s)	256, 519
ErhI	CCWWGG	2 cut(s)	256, 519
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	65, 258, 463
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	4 cut(s)	85, 99, 213, 380
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	262
GlaI	GCGC	2 cut(s)	117, 251
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	2 cut(s)	129, 394
HaeII	RGCGCY	1 cut(s)	253
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	2 cut(s)	118, 252
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	116, 250
HinP1I	GCGC	2 cut(s)	116, 250
HinfI	GANTC	2 cut(s)	384, 405
HphI	GGTGA	2 cut(s)	223, 229
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188III	TCNNGA	4 cut(s)	271, 304, 373, 388
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	6 cut(s)	132, 271, 277, 313, 491, 499
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	2 cut(s)	264, 449
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 287, 320, 364, 423
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	116, 250
Kzo9I	GATC	2 cut(s)	300, 486
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	3 cut(s)	29, 286, 375
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	103, 436
MaeIII	GTNAC	2 cut(s)	217, 472
MalI	GATC	2 cut(s)	302, 488
MboI	GATC	2 cut(s)	300, 486
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	8 cut(s)	129, 138, 160, 205, 251, 263, 374, 526
MroXI	GAANNNNTTC	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	147, 223
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	2 cut(s)	147, 223
MwoI	GCNNNNNNNGC	5 cut(s)	258, 287, 320, 364, 423
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	300, 486
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	3 cut(s)	282, 331, 517
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	2 cut(s)	217, 472
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	384, 405
PkrI	GCNGC	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	145, 221
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	2 cut(s)	145, 221
PspN4I	GGNNCC	3 cut(s)	282, 331, 517
PsuI	RGATCY	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	450
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	2 cut(s)	300, 486
ScrFI	CCNGG	2 cut(s)	147, 223
SduI	GDGCHC	1 cut(s)	518
SfaNI	GCATC	2 cut(s)	103, 436
Sse9I	AATT	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	145, 221
StyI	CCWWGG	2 cut(s)	256, 519
TaaI	ACNGT	1 cut(s)	478
TasI	AATT	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	384, 405
TseFI	GTSAC	2 cut(s)	217, 472
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	217, 472
TspDTI	ATGAA	1 cut(s)	456
XapI	RAATTY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.