Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

777890 .. 778725

Gene Structure 836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGGACAAGGCCGGAAAAGGAAGAAAGGAGGAGGTCGTTACCAGGGAGTACACCATCAATCTCCACAAGCGTTTGCATGGATGCACCTTTAAAAAGAAGGCTCCAAACGCCATAAAGGAAATCAGGAAGTTTGCTCAAAAGGCTATGGCTACTACTGATGTCAGAGTGGATGTTAAACTCAACAAGCACATTTGGAGCCGTGGGATTCGAAGTGTGCCAAGAAGGGTTCGCGTCCGAATTGCACGAAAGAGAAACGATGAAGAAGATGCCAAGGAAGAGTTTTACTCACTAGTCACTGTTACAGAGGTTCCGCCAGAGGGATTGAAGGGTTTGGGTACCAAGGTGGTTGACGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

121

Amino Acids

13.94

Weight (kDa)

9.9

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	12 - 93	2.7e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	338
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	53, 340
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	328
AhlI	ACTAGT	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BanI	GGYRCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	46
BmiI	GGNNCC	4 cut(s)	105, 200, 312, 340
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	2 cut(s)	74, 259
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu14I	TTCGAA	1 cut(s)	211
BsaJI	CCNNGG	4 cut(s)	45, 202, 273, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	4 cut(s)	45, 202, 273, 342
BseGI	GGATG	2 cut(s)	89, 178
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	320
BsnI	GGCC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	211
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	105, 200, 312, 340
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	338
BssECI	CCNNGG	4 cut(s)	45, 202, 273, 342
BssT1I	CCWWGG	2 cut(s)	273, 342
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	89, 178
BstFNI	CGCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 143
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	89, 178
BtsIMutI	CAGTG	1 cut(s)	297
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	52, 339
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	5 cut(s)	14, 104, 146, 152, 201
CviKI_1	RGCY	5 cut(s)	14, 104, 146, 152, 201
CviQI	GTAC	2 cut(s)	52, 339
DraI	TTTAAA	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	273, 342
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	273, 342
ErhI	CCWWGG	2 cut(s)	273, 342
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 116, 149
FatI	CATG	1 cut(s)	79
FokI	GGATG	2 cut(s)	96, 185
FspBI	CTAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	3 cut(s)	7, 54, 352
Hpy188I	TCNGA	2 cut(s)	167, 239
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	3 cut(s)	7, 54, 352
HpyAV	CCTTC	3 cut(s)	94, 219, 322
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	79, 87, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 143
Hsp92II	CATG	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	109, 198
LpnPI	CCDG	5 cut(s)	28, 31, 58, 112, 330
LweI	GCATC	2 cut(s)	74, 259
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	40, 295, 301
MboII	GAAGA	4 cut(s)	36, 275, 278, 290
MluCI	AATT	1 cut(s)	240
MnlI	CCTC	4 cut(s)	25, 28, 301, 313
MseI	TTAA	2 cut(s)	93, 177
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	110, 143
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	4 cut(s)	105, 200, 312, 340
NmuCI	GTSAC	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	4 cut(s)	105, 200, 312, 340
RsaI	GTAC	2 cut(s)	53, 340
RsaNI	GTAC	2 cut(s)	52, 339
SaqAI	TTAA	2 cut(s)	93, 177
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	4 cut(s)	39, 92, 312, 348
SfaNI	GCATC	2 cut(s)	74, 259
SfuI	TTCGAA	1 cut(s)	211
SpeI	ACTAGT	1 cut(s)	292
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	2 cut(s)	273, 342
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	93, 177
Tru9I	TTAA	2 cut(s)	93, 177
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	304
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.