Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

1801344 .. 1803140

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGGACAAGTCGGGCCGAGGTAGAAAAGAAGAGGTCGTCACCAGAGAGTACACCATCAACCTGCACAAGCGCCTCCATGGATGCACATTCAAGAAGAAGGCACCAAATGCCATAAAGGAGATTCGGAAGTTTGCCCAGAAGGCCATGGGAACGACAGACGTCAGGGTCGATGTGAAGCTGAACAAGTTGATTTGGAGCCGTGGTATCCGAAGTGTGCCAAGGAGGGTTCGTGTACGCATTGCCCGTAGAAGAAATGATGAGGAAGATGCCAAGGAGGAGCTCTATTCTCTAGTAACAGTCACCGAGATTCCACCAGAGGGTCTAAGGGGATTAGGCACCAAGGTCGTTGATGCAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

122

Amino Acids

13.88

Weight (kDa)

10.16

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	72
AccB1I	GGYRCC	2 cut(s)	103, 338
AciI	CCGC	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	53, 237
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	181, 283
AluI	AGCT	2 cut(s)	181, 283
Alw21I	GWGCWC	1 cut(s)	285
AoxI	GGCC	2 cut(s)	16, 144
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	34, 295
BanI	GGYRCC	2 cut(s)	103, 338
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciVI	GTATCC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	3 cut(s)	105, 200, 340
BmsI	GCATC	3 cut(s)	74, 259, 343
BoxI	GACNNNNGTC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	7 cut(s)	19, 79, 147, 202, 221, 273, 342
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 217, 220, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	7 cut(s)	19, 79, 147, 202, 221, 273, 342
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	18, 146
BshNI	GGYRCC	2 cut(s)	103, 338
BsiHKAI	GWGCWC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	320
BsnI	GGCC	2 cut(s)	18, 146
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp19I	CCATGG	2 cut(s)	79, 147
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	18, 146
BspLI	GGNNCC	3 cut(s)	105, 200, 340
BspMI	ACCTGC	1 cut(s)	72
BspT107I	GGYRCC	2 cut(s)	103, 338
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	7 cut(s)	19, 79, 147, 202, 221, 273, 342
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	5 cut(s)	79, 147, 221, 273, 342
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	3 cut(s)	79, 147, 202
BstF5I	GGATG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 143
BstPAI	GACNNNNGTC	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	18, 146
BtgI	CCRYGG	3 cut(s)	79, 147, 202
BtsCI	GGATG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	52, 236
CviAII	CATG	2 cut(s)	80, 148
CviJI	RGCY	5 cut(s)	18, 146, 181, 201, 283
CviKI_1	RGCY	5 cut(s)	18, 146, 181, 201, 283
CviQI	GTAC	2 cut(s)	52, 236
DdeI	CTNAG	1 cut(s)	326
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	5 cut(s)	79, 147, 221, 273, 342
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoT14I	CCWWGG	5 cut(s)	79, 147, 221, 273, 342
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	5 cut(s)	79, 147, 221, 273, 342
FaeI	CATG	2 cut(s)	83, 151
FaiI	YATR	3 cut(s)	81, 116, 149
FatI	CATG	2 cut(s)	79, 147
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	18, 146
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	83, 151
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	124, 310
HphI	GGTGA	2 cut(s)	34, 295
Hpy166II	GTNNAC	2 cut(s)	54, 236
Hpy188I	TCNGA	2 cut(s)	129, 212
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	54, 236
HpyAV	CCTTC	2 cut(s)	94, 136
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	67, 87, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 143
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	83, 151
HspAI	GCGC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	198, 280
LpnPI	CCDG	5 cut(s)	58, 77, 151, 152, 330
LweI	GCATC	3 cut(s)	74, 259, 343
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	40, 295, 301
MboII	GAAGA	4 cut(s)	44, 109, 264, 278
MhlI	GDGCHC	1 cut(s)	285
MnlI	CCTC	7 cut(s)	14, 28, 86, 219, 256, 271, 313
MwoI	GCNNNNNNNGC	2 cut(s)	110, 143
NcoI	CCATGG	2 cut(s)	79, 147
NlaIII	CATG	2 cut(s)	83, 151
NlaIV	GGNNCC	3 cut(s)	105, 200, 340
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	2 cut(s)	40, 301
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 244
PfeI	GAWTC	2 cut(s)	124, 310
PshAI	GACNNNNGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	105, 200, 340
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	53, 237
RsaNI	GTAC	2 cut(s)	52, 236
SacI	GAGCTC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	25, 39, 66, 165, 183, 285, 348
SfaNI	GCATC	3 cut(s)	74, 259, 343
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	285
StyI	CCWWGG	5 cut(s)	79, 147, 221, 273, 342
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	124, 310
TseFI	GTSAC	2 cut(s)	40, 301
Tsp45I	GTSAC	2 cut(s)	40, 301
XspI	CTAG	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.