Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

2204468 .. 2205583

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACGCAAAGCAAGACAGAAAGATATTTGTGGGTGGGATAACAGGGGAGGTTGATGAAGATATCTTGGAAGAACACTTCAGTAGATATGGGGTGGTAGAAGAGTGTGTGATCGTTTTGGATAAAATCACTCGTCAACCTAGAGAGTTTGGTTTTGTTACCTTCACTGACCCGTTAGTGGCTAAGAGAGTACTGGAAGAAAACCACACCATCTTTGGCAAGAAGATTGATGTAAGGCCTTCGGAACCAAAGCGTGAGAGAAACCAAATTTATCAAGAAGAGCAACATGTTCAACATCAAGGTTACATCCCTAAAAAGATTTTTGTGGGAGGTTTACCACATGATCTAACTGAAGATGAATTCAGAGACTACTTTGCTAAGTTTGGTGCAATTGATGATGGAATCATAATATATGACAAGGAAAGCAACACACCTAAAGGTTTCGGATTCATTACTTTTGAATCTGATGATTCTGTTGTCGATGTCTTGCATAAACAGAAAAACAAACTTCATGAACTGAAAGATAAGCATGTGGAGGTAATGAGAGCTCTTCCTGAAGTTAAGAAGAACTGGCATGGTATGTGGAGATGGCTTCAATTTGACGATCTTGCTTTCGGTATTGATCGTTTTTTTTGCTATAGTTGTGGAGGTGCTTACGGTTATGGACACTTTCAAGGGTGTTTATATTGGCCAAATCCGTATCATGGGGTTTGGAATATTATTAGGGTTATCCATGCTAATTGGATTGGTGGTGAAGTAGTTGATCAAAGTGCTTGGAATGGTTATTCTGATCAAAACAAACTTACTCATGTAAACTCAATCACAAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

277

Amino Acids

32.19

Weight (kDa)

5.71

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 74	1.6e-13	RNA recognition motif
RRM_7	PF16367	105 - 170	5.1e-09	RNA recognition motif
RRM_1	PF00076	107 - 164	1.5e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	267, 359
AcuI	CTGAAG	3 cut(s)	64, 372, 576
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	178, 704
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	293, 461, 596, 674
AluBI	AGCT	1 cut(s)	548
AluI	AGCT	1 cut(s)	548
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	236, 689
ApoI	RAATTY	2 cut(s)	267, 359
AsuHPI	GGTGA	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	550
BccI	CCATC	3 cut(s)	218, 392, 582
BclI	TGATCA	2 cut(s)	763, 790
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	637
BmcAI	AGTACT	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 704
Bse1I	ACTGG	2 cut(s)	198, 575
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	178, 704
BseNI	ACTGG	2 cut(s)	198, 575
BshFI	GGCC	2 cut(s)	238, 691
BsiHKAI	GWGCWC	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	178, 704
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	238, 691
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
BspANI	GGCC	2 cut(s)	238, 691
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	246
BspQI	GCTCTTC	2 cut(s)	273, 555
BsrI	ACTGG	2 cut(s)	198, 575
BssMI	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	3 cut(s)	96, 273, 555
BstDEI	CTNAG	2 cut(s)	183, 378
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	6 cut(s)	114, 346, 607, 625, 766, 793
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
BstNSI	RCATGY	2 cut(s)	290, 533
BstSFI	CTRYAG	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	238, 691
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	165
CciI	TCATGA	1 cut(s)	511
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	8 cut(s)	287, 341, 512, 530, 575, 704, 734, 809
CviJI	RGCY	5 cut(s)	182, 238, 548, 592, 691
CviKI_1	RGCY	5 cut(s)	182, 238, 548, 592, 691
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	183, 378
DpnI	GATC	6 cut(s)	113, 345, 606, 624, 765, 792
DpnII	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
EaeI	YGGCCR	1 cut(s)	689
Eam1104I	CTCTTC	3 cut(s)	96, 273, 555
EarI	CTCTTC	3 cut(s)	96, 273, 555
Ecl136II	GAGCTC	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	3 cut(s)	64, 372, 576
EcoICRI	GAGCTC	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	550
FaeI	CATG	8 cut(s)	290, 344, 515, 533, 578, 707, 737, 812
FatI	CATG	8 cut(s)	286, 340, 511, 529, 574, 703, 733, 808
FbaI	TGATCA	2 cut(s)	763, 790
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	550
FspBI	CTAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	238, 691
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	8 cut(s)	290, 344, 515, 533, 578, 707, 737, 812
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	4 cut(s)	402, 447, 461, 470
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	3 cut(s)	137, 335, 814
Hpy188I	TCNGA	5 cut(s)	244, 365, 446, 466, 790
Hpy188III	TCNNGA	3 cut(s)	275, 512, 554
Hpy8I	GTNNAC	3 cut(s)	137, 335, 814
HpyAV	CCTTC	2 cut(s)	172, 249
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4V	TGCA	2 cut(s)	389, 490
HpyF3I	CTNAG	2 cut(s)	183, 378
Hsp92II	CATG	8 cut(s)	290, 344, 515, 533, 578, 707, 737, 812
Ksp22I	TGATCA	2 cut(s)	763, 790
Kzo9I	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
LguI	GCTCTTC	2 cut(s)	273, 555
LpnPI	CCDG	4 cut(s)	30, 179, 556, 567
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	157, 302
MalI	GATC	6 cut(s)	113, 345, 606, 624, 765, 792
MboI	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
MboII	GAAGA	9 cut(s)	71, 83, 113, 209, 235, 290, 365, 542, 577
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	691
MluCI	AATT	5 cut(s)	267, 359, 390, 596, 739
MluNI	TGGCCA	1 cut(s)	691
MnlI	CCTC	4 cut(s)	43, 323, 529, 641
Mox20I	TGGCCA	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	691
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	691
MunI	CAATTG	1 cut(s)	390
NdeII	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
NlaIII	CATG	8 cut(s)	290, 344, 515, 533, 578, 707, 737, 812
NlaIV	GGNNCC	1 cut(s)	246
NspI	RCATGY	2 cut(s)	290, 533
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	238
PciI	ACATGT	1 cut(s)	286
PciSI	GCTCTTC	2 cut(s)	273, 555
PfeI	GAWTC	4 cut(s)	402, 447, 461, 470
PscI	ACATGT	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	246
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	550
SapI	GCTCTTC	2 cut(s)	273, 555
SaqAI	TTAA	1 cut(s)	561
Sau3AI	GATC	6 cut(s)	111, 343, 604, 622, 763, 790
ScaI	AGTACT	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	637
Sse9I	AATT	5 cut(s)	267, 359, 390, 596, 739
SseBI	AGGCCT	1 cut(s)	238
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	550
StuI	AGGCCT	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	659
TaqI	TCGA	1 cut(s)	480
TasI	AATT	5 cut(s)	267, 359, 390, 596, 739
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	402, 447, 461, 470
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	5 cut(s)	72, 372, 439, 500, 528
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	2 cut(s)	267, 359
XceI	RCATGY	2 cut(s)	290, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.