Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

728414 .. 728695

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGGAGGTGGATGCGATGGCTGTTCGACTGGCGGCTTCTCTGGGACTGGCAGATGTGAGTAGGCCAGTTGATCTTCGTCAGGCTCGTGGTGAGGGGCTGGGTCGATCCCAGACGTATCTGGTGGGAAAGTTGTTGACGGCTAGGGCTTTCAATAAGCGATCGTTCATGGGCATGTTCCAACTTGCATGGAGGTTGAATGGCCGGTACACTGCTCAGGAACATGGAGACCGTTTTATGTTCACCTTGACGGATCCAACGGATCGTAATCGGATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

10.79

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	6 cut(s)	102, 248, 261, 268, 270, 281
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	154, 199
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	6 cut(s)	102, 248, 261, 268, 270, 281
AoxI	GGCC	2 cut(s)	65, 202
AsuHPI	GGTGA	2 cut(s)	104, 235
BamHI	GGATCC	2 cut(s)	253, 273
BauI	CACGAG	1 cut(s)	87
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	255, 275
BmsI	GCATC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	3 cut(s)	36, 54, 68
Bse8I	GATNNNNATC	1 cut(s)	267
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	3 cut(s)	36, 54, 68
BseYI	CCCAGC	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	67, 204
BsiEI	CGRYCG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	67, 204
Bso31I	GGTCTC	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	67, 204
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	255, 275
BspPI	GGATC	6 cut(s)	102, 248, 261, 268, 270, 281
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	36, 54, 68
BssAI	RCCGGY	1 cut(s)	204
BssMI	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	6 cut(s)	76, 110, 164, 256, 265, 276
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
BstMCI	CGRYCG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	178
BstX2I	RGATCY	2 cut(s)	253, 273
BstYI	RGATCY	2 cut(s)	253, 273
BsuRI	GGCC	2 cut(s)	67, 204
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	4 cut(s)	169, 175, 189, 224
CviJI	RGCY	8 cut(s)	23, 38, 67, 86, 100, 143, 149, 204
CviKI_1	RGCY	8 cut(s)	23, 38, 67, 86, 100, 143, 149, 204
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	6 cut(s)	75, 109, 163, 255, 264, 275
DpnII	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
EaeI	YGGCCR	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	222
FaeI	CATG	4 cut(s)	172, 178, 192, 227
FaiI	YATR	5 cut(s)	170, 176, 190, 225, 239
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	168, 174, 188, 223
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	67, 204
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	4 cut(s)	172, 178, 192, 227
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	104, 235
Hpy166II	GTNNAC	3 cut(s)	138, 210, 243
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	3 cut(s)	138, 210, 243
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	172, 178, 192, 227
Kzo9I	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	116
MalI	GATC	6 cut(s)	75, 109, 163, 255, 264, 275
MboI	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	2 cut(s)	253, 273
MmeI	TCCRAC	2 cut(s)	205, 281
MnlI	CCTC	2 cut(s)	88, 186
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	1 cut(s)	205
NdeII	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
NlaIII	CATG	4 cut(s)	172, 178, 192, 227
NlaIV	GGNNCC	2 cut(s)	255, 275
NspI	RCATGY	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	255, 275
PsuI	RGATCY	2 cut(s)	253, 273
PvuI	CGATCG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	173
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	6 cut(s)	73, 107, 161, 253, 262, 273
SetI	ASST	4 cut(s)	12, 119, 197, 248
SfaNI	GCATC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	173
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	28, 106
TauI	GCSGC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	17, 157
TspGWI	ACGGA	2 cut(s)	266, 275
TspRI	CASTG	1 cut(s)	217
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.