Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

36992543 .. 36994473

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1315000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGAAGGCCATCAGTATATGATCGCCCAATCGTTAAAGCCCTAGGGCGCATGCTATTGAGCATCCGACGGACAGTGAGTTCATTGCATCAGGGAGGCGGGGTTGAGCTCAGAGCTTTAACAATGGAGAAGAAGGGCGGTGGCAAGGGGAGAAAGGAGGAGGTCGTTACCAGAGAGTACACCATCAACGTCCACAAACGCTTGCATGGATGCACATTTAAGAAGAAGGCACCAAATGCGATAAAGGAAATCAGGAAGTTTGCTCAAAAGTCCATGGGAACCACTGATGTCAGAGTGGATGTAAAGCTCAACAAGCACATATGGAGCCGTGGTATTCGGAGTGTGCCAAGAAGGATACGTGTCCGTATTGCAAGGAAGAGAAATGATGATGAAGATGCCAAGGAAGAGTTTTACTCTCTAGTCACCGTTACAGAGGTCCCTCCAGAGGGATTTAGTGGTTTGGGCACCAAGGTGATCGATGAAGAAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

165

Amino Acids

18.67

Weight (kDa)

10.33

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	54 - 135	6.1e-43	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	229, 464
AciI	CCGC	2 cut(s)	99, 138
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	445, 446
AflIII	ACRYGT	1 cut(s)	358
AleI	CACNNNNGTG	1 cut(s)	470
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	3 cut(s)	109, 116, 307
AluI	AGCT	3 cut(s)	109, 116, 307
Alw21I	GWGCWC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	415, 484
AvaII	GGWCC	1 cut(s)	436
AvrII	CCTAGG	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	467
BanI	GGYRCC	2 cut(s)	229, 464
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	2 cut(s)	19, 191
BceAI	ACGGC	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	44, 419
BfuI	GTATCC	1 cut(s)	348
BlnI	CCTAGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	5 cut(s)	231, 280, 326, 438, 466
BmsI	GCATC	4 cut(s)	72, 97, 200, 385
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	1 cut(s)	426
Bsa29I	ATCGAT	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	5 cut(s)	43, 273, 328, 399, 468
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 316, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 446
Bse3DI	GCAATG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	5 cut(s)	43, 273, 328, 399, 468
BseGI	GGATG	3 cut(s)	63, 215, 304
BseLI	CCNNNNNNNGG	2 cut(s)	445, 446
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	467
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	2 cut(s)	229, 464
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	445, 446
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	111, 467
Bsp143I	GATC	2 cut(s)	22, 474
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	2 cut(s)	99, 138
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	477
BspLI	GGNNCC	5 cut(s)	231, 280, 326, 438, 466
BspT107I	GGYRCC	2 cut(s)	229, 464
BsrDI	GCAATG	1 cut(s)	83
BssECI	CCNNGG	5 cut(s)	43, 273, 328, 399, 468
BssMI	GATC	2 cut(s)	22, 474
BssT1I	CCWWGG	4 cut(s)	43, 273, 399, 468
Bst4CI	ACNGT	2 cut(s)	76, 427
Bst6I	CTCTTC	2 cut(s)	371, 399
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	53, 203
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	2 cut(s)	273, 328
BstF5I	GGATG	3 cut(s)	63, 215, 304
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	25, 477
BstMBI	GATC	2 cut(s)	22, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 313
BstNSI	RCATGY	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	467
Bsu15I	ATCGAT	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	2 cut(s)	273, 328
BtsCI	GGATG	3 cut(s)	63, 215, 304
BtsIMutI	CAGTG	2 cut(s)	81, 282
Cac8I	GCNNGC	2 cut(s)	53, 203
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	52, 206, 274
CviJI	RGCY	6 cut(s)	10, 41, 109, 116, 307, 327
CviKI_1	RGCY	6 cut(s)	10, 41, 109, 116, 307, 327
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	24, 476
DpnII	GATC	2 cut(s)	22, 474
Eam1104I	CTCTTC	2 cut(s)	371, 399
EarI	CTCTTC	2 cut(s)	371, 399
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	4 cut(s)	43, 273, 399, 468
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	436
EcoT14I	CCWWGG	4 cut(s)	43, 273, 399, 468
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	4 cut(s)	43, 273, 399, 468
FaeI	CATG	3 cut(s)	55, 209, 277
FaiI	YATR	7 cut(s)	19, 21, 53, 207, 275, 320, 322
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	51, 205, 273
FauI	CCCGC	1 cut(s)	92
FauNDI	CATATG	1 cut(s)	320
FokI	GGATG	3 cut(s)	50, 222, 311
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	44, 419
GlaI	GCGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	55, 209, 277
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HphI	GGTGA	2 cut(s)	415, 484
Hpy166II	GTNNAC	2 cut(s)	180, 193
Hpy188I	TCNGA	4 cut(s)	68, 113, 293, 339
Hpy188III	TCNNGA	2 cut(s)	253, 443
Hpy8I	GTNNAC	2 cut(s)	180, 193
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	4 cut(s)	127, 220, 345, 482
HpyCH4III	ACNGT	2 cut(s)	76, 427
HpyCH4IV	ACGT	2 cut(s)	189, 358
HpyCH4V	TGCA	4 cut(s)	88, 205, 213, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 313
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	189, 358
Hsp92II	CATG	3 cut(s)	55, 209, 277
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	22, 474
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	4 cut(s)	77, 184, 238, 456
LweI	GCATC	4 cut(s)	72, 97, 200, 385
MaeI	CTAG	2 cut(s)	44, 419
MaeII	ACGT	2 cut(s)	189, 358
MaeIII	GTNAC	3 cut(s)	166, 421, 427
MalI	GATC	2 cut(s)	24, 476
MboI	GATC	2 cut(s)	22, 474
MboII	GAAGA	6 cut(s)	142, 235, 388, 404, 416, 494
MhlI	GDGCHC	2 cut(s)	111, 467
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	89, 151, 154, 427, 439, 450
MseI	TTAA	3 cut(s)	36, 119, 219
MslI	CAYNNNNRTG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	236, 313
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	2 cut(s)	22, 474
NlaIII	CATG	3 cut(s)	55, 209, 277
NlaIV	GGNNCC	5 cut(s)	231, 280, 326, 438, 466
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	436
PspN4I	GGNNCC	5 cut(s)	231, 280, 326, 438, 466
PspPI	GGNCC	1 cut(s)	436
PspPPI	RGGWCCY	1 cut(s)	436
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	36, 119, 219
Sau3AI	GATC	2 cut(s)	22, 474
Sau96I	GGNCC	1 cut(s)	436
SduI	GDGCHC	2 cut(s)	111, 467
SetI	ASST	9 cut(s)	111, 118, 165, 192, 309, 361, 438, 474, 493
SfaNI	GCATC	4 cut(s)	72, 97, 200, 385
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	55
SsiI	CCGC	2 cut(s)	99, 138
SspMI	CTAG	2 cut(s)	44, 419
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	4 cut(s)	43, 273, 399, 468
TaaI	ACNGT	2 cut(s)	76, 427
TaiI	ACGT	2 cut(s)	192, 361
TaqI	TCGA	1 cut(s)	477
TatI	WGTACW	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	36, 119, 219
Tru9I	TTAA	3 cut(s)	36, 119, 219
TscAI	CASTG	2 cut(s)	81, 289
TseFI	GTSAC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	72, 405, 495
TspGWI	ACGGA	2 cut(s)	85, 353
TspRI	CASTG	2 cut(s)	81, 289
VpaK11BI	GGWCC	1 cut(s)	436
XceI	RCATGY	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	44, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.