Rmu_sc0000433.1_g000029

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000433.1
OG0001234
Physical Location & Seq
Reverse (-)
124280 .. 125324
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000433.1_g000029.1.cds

Sequence Viewer

Length: 285 bp
atggtggagaagacgggtcgaggaagaaaagaagaggtggtcaccagagagtacaccgtcaatcttcacaagcgactccatggatgggtcgatgtgaagctcaacaagcacatttggagccggggcattcgaagtgtgccaagaagggttcgtgtacgcattgctcgcagaagaaacgaggaggaagatgctaaagaggagttatactctctggtaacagtcactgaggttccaccagcgggtctcaagggattaggcaccacagtcatcgatgcagatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L31e

Protein Analysis

94

Amino Acids

10.87

Weight (kDa)

9.88

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 239
AfaI GTAC 2 cut(s) 53, 156
AfiI CCNNNNNNNGG 2 cut(s) 85, 239
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 17
BccI CCATC 1 cut(s) 78
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 119, 231, 259
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 178, 262
BpiI GAAGAC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 79, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 239
Bse3DI GCAATG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 79, 121
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 85, 239
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 194, 212
BshNI GGYRCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 85, 239
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 119, 231, 259
BspT104I TTCGAA 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 79, 121
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 58, 220, 265
Bst6I CTCTTC 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 106, 165
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 52, 155
CviAII CATG 1 cut(s) 80
CviJI RGCY 2 cut(s) 100, 120
CviKI_1 RGCY 2 cut(s) 100, 120
CviQI GTAC 2 cut(s) 52, 155
DdeI CTNAG 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 205
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 232
FokI GGATG 1 cut(s) 96
HapII CCGG 1 cut(s) 121
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 54, 155
Hpy8I GTNNAC 2 cut(s) 54, 155
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 3 cut(s) 58, 220, 265
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 165
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 83
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 58, 134, 197, 249
LweI GCATC 2 cut(s) 178, 262
MaeIII GTNAC 3 cut(s) 40, 214, 220
MboII GAAGA 6 cut(s) 22, 36, 44, 56, 183, 197
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 6 cut(s) 14, 28, 172, 175, 190, 220
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 106, 165
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 79
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 3 cut(s) 119, 231, 259
NmuCI GTSAC 2 cut(s) 40, 220
NspV TTCGAA 1 cut(s) 130
PctI GAATGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 40
PspN4I GGNNCC 3 cut(s) 119, 231, 259
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 53, 156
RsaNI GTAC 2 cut(s) 52, 155
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 122
SetI ASST 3 cut(s) 39, 102, 231
SfaNI GCATC 2 cut(s) 178, 262
SfuI TTCGAA 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SsiI CCGC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 58, 220, 265
TaqI TCGA 4 cut(s) 19, 90, 130, 270
TatI WGTACW 1 cut(s) 51
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 40, 220
Tsp45I GTSAC 2 cut(s) 40, 220
TspRI CASTG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.