Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

1258689 .. 1259911

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTGGAGGCCAAGGCCGGAAAAGGAAGAAAGGAGGAGGTTGTTACCAGGGAATACACCATCAATCTTCACAAGCGCTTGCATGGCTGCACCTTTAAAAAGAAGGCTCCAAACGCCATAAAGGAAATCAGGAAGTTTGCTCAGAAGGCTATGGCTACTACTGATGTCAGAGTGGATGTTAAACTCAACAATCACATTTGGAGCCGTGGGATTCGAAGTGTGCCAAGAAGGGTTCGTATCCGAATTGCACGAAAGAGAAATGACGAAGAAGATGCCAAGGAAGAGTTTTACTCACTAGTCACTGTTACAGAGGTTCCACCAGAGGGATTGAAGGGGTTGGGTACTAAGGTGGTTGACGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

123

Amino Acids

14.03

Weight (kDa)

9.85

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	13 - 94	2.3e-41	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	331
AhlI	ACTAGT	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	2 cut(s)	9, 15
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	78
AsuII	TTCGAA	1 cut(s)	214
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	108, 203, 315
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu14I	TTCGAA	1 cut(s)	214
BsaJI	CCNNGG	4 cut(s)	12, 48, 205, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	4 cut(s)	12, 48, 205, 276
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	11, 17
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	2 cut(s)	11, 17
Bsp119I	TTCGAA	1 cut(s)	214
BspANI	GGCC	2 cut(s)	11, 17
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	108, 203, 315
BspT104I	TTCGAA	1 cut(s)	214
BssECI	CCNNGG	4 cut(s)	12, 48, 205, 276
BssT1I	CCWWGG	2 cut(s)	12, 276
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	141, 345
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 113, 146
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	11, 17
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	7 cut(s)	11, 17, 87, 107, 149, 155, 204
CviKI_1	RGCY	7 cut(s)	11, 17, 87, 107, 149, 155, 204
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	2 cut(s)	141, 345
DraI	TTTAAA	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	12, 276
Eco47III	AGCGCT	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	12, 276
ErhI	CCWWGG	2 cut(s)	12, 276
FaeI	CATG	1 cut(s)	86
FaiI	YATR	3 cut(s)	84, 119, 152
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	11, 17
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	144, 170, 242
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	4 cut(s)	97, 139, 222, 325
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	82, 90, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 113, 146
HpyF3I	CTNAG	2 cut(s)	141, 345
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	112, 201
LpnPI	CCDG	5 cut(s)	31, 34, 61, 115, 333
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	43, 298, 304
MboII	GAAGA	5 cut(s)	39, 59, 278, 281, 293
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	4 cut(s)	28, 31, 304, 316
MseI	TTAA	2 cut(s)	96, 180
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	84, 113, 146
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	3 cut(s)	108, 203, 315
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	108, 203, 315
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	96, 180
SatI	GCNGC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	4 cut(s)	42, 95, 315, 351
SfaNI	GCATC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	214
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	12, 276
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	96, 180
Tru9I	TTAA	2 cut(s)	96, 180
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	298
TspRI	CASTG	1 cut(s)	307
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.