Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

24199178 .. 24200771

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGGGCATTTTATGAGAAGGCGATCGTTAAAGGAGGCGGAGGTGAGCTCAGAGCTTTAACAATGGCGGAGAAGGGCCGTGGCAAGGGGAGAAAGGAGGAGGTCGTTTCCAGAGAGTACACCATCAACCTCCACAAACGCTTGCATGGATGCACATTTAAGAAGAAGGCACCAAATGCGATAAAGGAAATCAGGAAGTTTGCTCAAAAGTCTATGGGAACCACTGATGTCAGAGTGGATGTTAAGCTTAACAAGCACATATGGAGCCGTGGTATTCGGAGTGTGCCAAGAAGGATACGTGTCCGCCTTGCAAGGAAGAGAAACGATGATGAAGATGCCAAGGAAGAGTTTTACTCACTAGTCACTGTTACAGAGGTTCCTCCAGAGGGATTTAGTGGCTTGGGCACCAAGGTGATCGATGAAGAAGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

9.99

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	34 - 115	3.3e-43	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	169, 404
AciI	CCGC	3 cut(s)	39, 68, 304
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	85, 386
AflIII	ACRYGT	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	358
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	3 cut(s)	49, 56, 247
AluI	AGCT	3 cut(s)	49, 56, 247
Alw21I	GWGCWC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	56, 424
BaeGI	GKGCMC	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	169, 404
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	2 cut(s)	63, 252
BciVI	GTATCC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	5 cut(s)	171, 220, 266, 378, 406
BmsI	GCATC	2 cut(s)	140, 325
BplI	GAGNNNNNCTC	4 cut(s)	33, 65, 338, 370
BpmI	CTGGAG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	79, 268, 339, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 386
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	79, 268, 339, 408
BseGI	GGATG	2 cut(s)	155, 244
BseLI	CCNNNNNNNGG	2 cut(s)	85, 386
BseMII	CTCAG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	2 cut(s)	169, 404
BshVI	ATCGAT	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	85, 386
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	51, 407
Bsp143I	GATC	2 cut(s)	24, 414
BspACI	CCGC	3 cut(s)	39, 68, 304
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	5 cut(s)	171, 220, 266, 378, 406
BspT107I	GGYRCC	2 cut(s)	169, 404
BssECI	CCNNGG	4 cut(s)	79, 268, 339, 408
BssMI	GATC	2 cut(s)	24, 414
BssT1I	CCWWGG	2 cut(s)	339, 408
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	311, 339
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	2 cut(s)	79, 268
BstF5I	GGATG	2 cut(s)	155, 244
BstKTI	GATC	2 cut(s)	27, 417
BstMBI	GATC	2 cut(s)	24, 414
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 253
BstSLI	GKGCMC	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	2 cut(s)	79, 268
BtsCI	GGATG	2 cut(s)	155, 244
BtsIMutI	CAGTG	2 cut(s)	222, 363
Cac8I	GCNNGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	7 cut(s)	49, 56, 78, 247, 267, 399, 432
CviKI_1	RGCY	7 cut(s)	49, 56, 78, 247, 267, 399, 432
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	26, 416
DpnII	GATC	2 cut(s)	24, 414
Eam1104I	CTCTTC	2 cut(s)	311, 339
EarI	CTCTTC	2 cut(s)	311, 339
EciI	GGCGGA	3 cut(s)	54, 83, 293
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	339, 408
Eco24I	GRGCYC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	339, 408
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	339, 408
FaeI	CATG	1 cut(s)	149
FaiI	YATR	5 cut(s)	15, 147, 215, 260, 262
FatI	CATG	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	260
FokI	GGATG	2 cut(s)	162, 251
FriOI	GRGCYC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	245
HphI	GGTGA	2 cut(s)	56, 424
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	53, 233, 279
Hpy188III	TCNNGA	3 cut(s)	111, 193, 383
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	5 cut(s)	13, 67, 160, 285, 422
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	145, 153, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 253
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	24, 414
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	3 cut(s)	124, 178, 396
LweI	GCATC	2 cut(s)	140, 325
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	361, 367
MalI	GATC	2 cut(s)	26, 416
MboI	GATC	2 cut(s)	24, 414
MboII	GAAGA	5 cut(s)	175, 328, 344, 356, 434
MhlI	GDGCHC	2 cut(s)	51, 407
MnlI	CCTC	8 cut(s)	29, 35, 91, 94, 140, 367, 379, 390
MseI	TTAA	5 cut(s)	30, 59, 159, 243, 249
MslI	CAYNNNNRTG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	176, 253
NdeI	CATATG	1 cut(s)	260
NdeII	GATC	2 cut(s)	24, 414
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	5 cut(s)	171, 220, 266, 378, 406
NmuCI	GTSAC	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	410
Ple19I	CGATCG	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	51
PspN4I	GGNNCC	5 cut(s)	171, 220, 266, 378, 406
PspPI	GGNCC	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	30, 59, 159, 243, 249
Sau3AI	GATC	2 cut(s)	24, 414
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	51, 407
SetI	ASST	9 cut(s)	46, 51, 58, 105, 132, 249, 301, 378, 414
SfaNI	GCATC	2 cut(s)	140, 325
SmiMI	CAYNNNNRTG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	39, 68, 304
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	339, 408
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	417
TatI	WGTACW	1 cut(s)	117
Tru1I	TTAA	5 cut(s)	30, 59, 159, 243, 249
Tru9I	TTAA	5 cut(s)	30, 59, 159, 243, 249
TscAI	CASTG	2 cut(s)	229, 370
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	345, 435
TspRI	CASTG	2 cut(s)	229, 370
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.