Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

6030193 .. 6031823

Gene Structure 1631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTGAGAAGACTAAGGGACGAAAGGAGGAGGTCGTCACCAGGGAGTTCACCATCAACCTCCACAAGCGCCTCCATGGCTGCACATTCAAGAAGAAGGCTCCTAATGCCATCAAAGAGATCAGGAAGTTTGCCCAGAAGGCAATGGGAACAATTGATGTCAGGGTGGATGTGAAGCTGAACAAGCAAATCTGGAGCAGAGGAATCAGGAGTGTCCCAAGAAGAATCAGGGTTCGCATTGCTCGCAAGAGGAATGATGATGAAGATGCAAAGGAAGAGCTATACTCCCTTGTGACTGTTGCAGAGATCCCAGCTGATGGACTGAAGGGCTTGGGCACCAAGGTCATTGAAGAGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

120

Amino Acids

13.83

Weight (kDa)

9.95

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	11 - 92	3.2e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	317
AclWI	GGATC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	91, 350
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	178, 280, 314
AluI	AGCT	3 cut(s)	178, 280, 314
AlwI	GGATC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	31, 43
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	3 cut(s)	62, 119, 311
BciT130I	CCWGG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	73
BglI	GCCNNNNNGGC	2 cut(s)	78, 140
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	102, 337
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpmI	CTGGAG	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	42, 76, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	150, 237
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	42, 76, 339
BseGI	GGATG	2 cut(s)	175, 361
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	2 cut(s)	150, 237
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	33, 200
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	33, 200
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	120, 306
Bsp19I	CCATGG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	102, 337
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	150, 237
BssECI	CCNNGG	3 cut(s)	42, 76, 339
BssMI	GATC	2 cut(s)	120, 306
BssT1I	CCWWGG	2 cut(s)	76, 339
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	270, 345
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	175, 361
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	123, 309
BstMBI	GATC	2 cut(s)	120, 306
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 107, 140, 184, 243
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	175, 361
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	72
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	81, 101, 178, 280, 314, 330
CviKI_1	RGCY	6 cut(s)	81, 101, 178, 280, 314, 330
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	122, 308
DpnII	GATC	2 cut(s)	120, 306
Eam1104I	CTCTTC	2 cut(s)	270, 345
EarI	CTCTTC	2 cut(s)	270, 345
Eco130I	CCWWGG	2 cut(s)	76, 339
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	2 cut(s)	76, 339
ErhI	CCWWGG	2 cut(s)	76, 339
FaeI	CATG	1 cut(s)	80
FaiI	YATR	2 cut(s)	78, 283
FaqI	GGGAC	2 cut(s)	33, 200
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	82
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	82
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	73
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	204, 225
HphI	GGTGA	2 cut(s)	31, 43
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188III	TCNNGA	4 cut(s)	91, 124, 193, 208
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	91, 133, 319
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	84, 269, 302
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 107, 140, 184, 243
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	120, 306
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	106, 195
LpnPI	CCDG	9 cut(s)	28, 55, 109, 148, 149, 178, 193, 214, 324
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	37, 292
MalI	GATC	2 cut(s)	122, 308
MboI	GATC	2 cut(s)	120, 306
MboII	GAAGA	6 cut(s)	22, 106, 234, 275, 287, 362
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	7 cut(s)	22, 25, 71, 83, 194, 243, 346
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	5 cut(s)	78, 107, 140, 184, 243
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	120, 306
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	102, 337
NmuCI	GTSAC	2 cut(s)	37, 292
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	204, 225
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	102, 337
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	270
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	2 cut(s)	120, 306
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	6 cut(s)	36, 63, 180, 282, 316, 345
SfaNI	GCATC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	76, 339
TaaI	ACNGT	1 cut(s)	298
TasI	AATT	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	204, 225
TseFI	GTSAC	2 cut(s)	37, 292
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	37, 292
TspDTI	ATGAA	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.