Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

22943707 .. 22944993

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCTGAGAAAAAGGGAAGGAAAGAGGAAGTGATTACCAGAGAGTACACCATTAACCTCCACAGACGCCTTCACAAATGCACCTTTAAGAAGAAGGCACCGAAAGCCATCAAGGAAATCAGGAAGTTCGCAGAGAAAGCTATGGGGACTAAGGACGTTAGGGTAGACGTGAAATTGAACAAGCAAATCTGGAGCAAGGGAATCAGAGGTCCACCAAGGAGGATCAGGGTTCGTGTTGCACGTAAGAGAAACGACGATGAAGATGCGAAGGAAGAGTTCTTCTCCCTTGTCACTGTTGCTGAAATCCCTGCAGAAGGACTCAGTGGTCTTGGCACAAAGGTCATCGAAGAGGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

119

Amino Acids

13.8

Weight (kDa)

9.95

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	10 - 58	5e-23	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	169
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	97
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BfmI	CTRYAG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	267, 342
BstACI	GRCGYC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	6, 150, 320
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 137
BstSFI	CTRYAG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	291, 328
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	2 cut(s)	107, 140
CviKI_1	RGCY	2 cut(s)	107, 140
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	6, 150, 320
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	267, 342
EarI	CTCTTC	2 cut(s)	267, 342
Eco130I	CCWWGG	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaiI	YATR	1 cut(s)	143
FaqI	GGGAC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	211
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	201, 318
Hpy166II	GTNNAC	3 cut(s)	48, 166, 212
Hpy188I	TCNGA	2 cut(s)	7, 206
Hpy188III	TCNNGA	2 cut(s)	121, 190
Hpy8I	GTNNAC	3 cut(s)	48, 166, 212
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	5 cut(s)	12, 80, 88, 262, 308
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	3 cut(s)	156, 168, 241
HpyCH4V	TGCA	3 cut(s)	81, 239, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 137
HpyF3I	CTNAG	3 cut(s)	6, 150, 320
HpySE526I	ACGT	3 cut(s)	156, 168, 241
Hsp92I	GRCGYC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	5 cut(s)	52, 106, 175, 211, 321
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	3 cut(s)	156, 168, 241
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	5 cut(s)	103, 271, 272, 284, 359
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	19, 68, 200, 213, 343, 346
MseI	TTAA	3 cut(s)	54, 87, 358
MwoI	GCNNNNNNNGC	2 cut(s)	104, 137
NdeII	GATC	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Ppu21I	YACGTR	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	54, 87, 358
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	312
SetI	ASST	8 cut(s)	60, 86, 142, 159, 171, 211, 244, 342
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	3 cut(s)	159, 171, 244
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	173
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	3 cut(s)	54, 87, 358
Tru9I	TTAA	3 cut(s)	54, 87, 358
TscAI	CASTG	2 cut(s)	298, 328
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	298, 328
VpaK11BI	GGWCC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.