Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

19481047 .. 19483203

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G215000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTGAGAAGACAAAGGGAAGGAAGGAGGAGGTGGTGACCAGAGAGTACACCATCAATCTCCACAAGCGCCTCCATGGCTGCACATTCAAGAAGAAGGCTCCTAATGCCATAAAGGAGATCAGGAAGTTCGCTCAGAAGGCAATGGGGACAAATGATGTTAGGGTGGATGTGAAGCTGAACAAGCAGATCTGGAGCAGAGGAATCAGGAGCGTCCCAAGAAGGATTAGGGTTCGCATTGCTCGCAAGAGGAATGATGATGAAGATGCCAAGGAAGAGCTTTACTCACTTGTTACCGTTGCAGAGATCCCAGCTGAAGGACTGAGTGGGTTGGGCACCAAGGTCATTGAAGAGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

9.85

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	91, 350
AluBI	AGCT	3 cut(s)	178, 280, 314
AluI	AGCT	3 cut(s)	178, 280, 314
AlwI	GGATC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	102, 337
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpmI	CTGGAG	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	76, 270, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	150, 237
BseDI	CCNNGG	3 cut(s)	76, 270, 339
BseGI	GGATG	2 cut(s)	175, 361
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	2 cut(s)	150, 237
BseMII	CTCAG	2 cut(s)	149, 314
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	163, 200
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	163, 200
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	120, 189, 306
Bsp19I	CCATGG	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	148, 315
BspLI	GGNNCC	2 cut(s)	102, 337
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	150, 237
BssECI	CCNNGG	3 cut(s)	76, 270, 339
BssMI	GATC	3 cut(s)	120, 189, 306
BssT1I	CCWWGG	3 cut(s)	76, 270, 339
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	270, 345
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	135, 323
BstDSI	CCRYGG	1 cut(s)	76
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	175, 361
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	123, 192, 309
BstMBI	GATC	3 cut(s)	120, 189, 306
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 107, 140, 184, 243
BstPI	GGTNACC	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	189, 306
BstYI	RGATCY	2 cut(s)	189, 306
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	175, 361
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	72
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	5 cut(s)	81, 101, 178, 280, 314
CviKI_1	RGCY	5 cut(s)	81, 101, 178, 280, 314
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	135, 323
DpnI	GATC	3 cut(s)	122, 191, 308
DpnII	GATC	3 cut(s)	120, 189, 306
Eam1104I	CTCTTC	2 cut(s)	270, 345
EarI	CTCTTC	2 cut(s)	270, 345
Eco130I	CCWWGG	3 cut(s)	76, 270, 339
Eco57I	CTGAAG	1 cut(s)	336
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	76, 270, 339
ErhI	CCWWGG	3 cut(s)	76, 270, 339
FaeI	CATG	1 cut(s)	80
FaiI	YATR	2 cut(s)	78, 113
FaqI	GGGAC	2 cut(s)	163, 200
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	82
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	82
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	73
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	204
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	4 cut(s)	91, 124, 193, 208
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	6 cut(s)	15, 19, 91, 133, 216, 311
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	84, 302
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 107, 140, 184, 243
HpyF3I	CTNAG	2 cut(s)	135, 323
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	120, 189, 306
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	3 cut(s)	106, 195, 210
LpnPI	CCDG	5 cut(s)	55, 109, 178, 193, 324
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	37, 292
MalI	GATC	3 cut(s)	122, 191, 308
MboI	GATC	3 cut(s)	120, 189, 306
MboII	GAAGA	5 cut(s)	22, 106, 275, 287, 362
MflI	RGATCY	2 cut(s)	189, 306
MhlI	GDGCHC	1 cut(s)	338
MnlI	CCTC	6 cut(s)	22, 25, 83, 194, 243, 346
MspA1I	CMGCKG	1 cut(s)	314
MwoI	GCNNNNNNNGC	5 cut(s)	78, 107, 140, 184, 243
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	120, 189, 306
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	102, 337
NmuCI	GTSAC	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	83
PspEI	GGTNACC	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	102, 337
PsuI	RGATCY	2 cut(s)	189, 306
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	270
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	3 cut(s)	120, 189, 306
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	5 cut(s)	36, 180, 282, 316, 345
SfaNI	GCATC	1 cut(s)	256
StyI	CCWWGG	3 cut(s)	76, 270, 339
TaaI	ACNGT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.