Rh1DG029000

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001234
Physical Location & Seq
Reverse (-)
4445399 .. 4455308
9910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG029000.1

Sequence Viewer

Length: 423 bp
ATGAGTACGGTGTGTAAAAAAACCGGTACTTACAGTGTCGGAGAAAAGTTGATTTGCAGGCAAGACAAGGCCGGAAAAGGAAGAAAGGAGGAGGTCGTTACCAGGGAGTATACCATCAATCTCCACAAGCGCTTGCATGGATGCACCTTTAAAAAGAAGGCTCCAAACGCCATAAAGGAAATCAGGAAGTTTGCTCAAAAGGCCATGGCTACTACTGATGTCAGAGTGGATGTTAAACTCAACAAGCACATTTGGAGCCGTGGGATTCGAAGTGTGCCAAGAAGGGTTCGCGTCCGAATTGCACGAAAGAGAAACGATGAAGAAGATGCCAAGGAAGAGTTCTACTCCCTGGTTACTGTTACAGAGGTTCCGCCAGAGGGATTGAAGGGTTTGGGTACCAAGGTGATTGACGAAGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L31e

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

9.86

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L31e PF01198 31 - 112 4.2e-42 Ribosomal protein L31e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 110
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 371
AfaI GTAC 3 cut(s) 7, 28, 397
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 377
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 2 cut(s) 101, 348
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 2 cut(s) 69, 201
AsiGI ACCGGT 1 cut(s) 23
Asp718I GGTACC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 415
AsuII TTCGAA 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 1 cut(s) 395
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 103, 350
BfoI RGCGCY 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 103, 350
BmiI GGNNCC 4 cut(s) 162, 257, 369, 397
BmrFI CCNGG 2 cut(s) 103, 350
BmsI GCATC 2 cut(s) 131, 316
BplI GAGNNNNNCTC 2 cut(s) 329, 361
Bpu14I TTCGAA 1 cut(s) 268
BsaJI CCNNGG 6 cut(s) 102, 204, 259, 330, 348, 399
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 23
BseBI CCWGG 2 cut(s) 103, 350
BseDI CCNNGG 6 cut(s) 102, 204, 259, 330, 348, 399
BseGI GGATG 2 cut(s) 146, 235
BseLI CCNNNNNNNGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 71, 203
BshNI GGYRCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 23
BsiSI CCGG 2 cut(s) 24, 72
BslI CCNNNNNNNGG 1 cut(s) 377
BsnI GGCC 2 cut(s) 71, 203
Bsp119I TTCGAA 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 71, 203
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 4 cut(s) 162, 257, 369, 397
BspT104I TTCGAA 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 6 cut(s) 102, 204, 259, 330, 348, 399
BssNAI GTATAC 1 cut(s) 111
BssT1I CCWWGG 3 cut(s) 204, 330, 399
Bst1107I GTATAC 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 103, 350
Bst4CI ACNGT 3 cut(s) 10, 35, 358
Bst6I CTCTTC 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 59, 134
BstDSI CCRYGG 2 cut(s) 204, 259
BstF5I GGATG 2 cut(s) 146, 235
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 167, 200
BstNI CCWGG 2 cut(s) 103, 350
BstSCI CCNGG 2 cut(s) 101, 348
BstUI CGCG 1 cut(s) 291
BstZ17I GTATAC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 71, 203
BtgI CCRYGG 2 cut(s) 204, 259
BtsCI GGATG 2 cut(s) 146, 235
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 59, 134
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 23
CseI GACGC 1 cut(s) 280
Csp6I GTAC 3 cut(s) 6, 27, 396
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 2 cut(s) 137, 205
CviJI RGCY 5 cut(s) 71, 161, 203, 209, 258
CviKI_1 RGCY 5 cut(s) 71, 161, 203, 209, 258
CviQI GTAC 3 cut(s) 6, 27, 396
DraI TTTAAA 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 3 cut(s) 204, 330, 399
Eco47III AGCGCT 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 101, 348
EcoT14I CCWWGG 3 cut(s) 204, 330, 399
ErhI CCWWGG 3 cut(s) 204, 330, 399
FaeI CATG 2 cut(s) 140, 208
FaiI YATR 4 cut(s) 111, 138, 173, 206
FatI CATG 2 cut(s) 136, 204
FblI GTMKAC 1 cut(s) 110
FokI GGATG 2 cut(s) 153, 242
GlaI GCGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 2 cut(s) 71, 203
HapII CCGG 2 cut(s) 24, 72
HgaI GACGC 1 cut(s) 280
HhaI GCGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 140, 208
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HinfI GANTC 1 cut(s) 265
HpaII CCGG 2 cut(s) 24, 72
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 3 cut(s) 41, 224, 296
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 151, 276, 379
HpyCH4III ACNGT 3 cut(s) 10, 35, 358
HpyCH4V TGCA 4 cut(s) 57, 136, 144, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 200
Hsp92II CATG 2 cut(s) 140, 208
HspAI GCGC 1 cut(s) 130
KpnI GGTACC 1 cut(s) 399
LmnI GCTCC 2 cut(s) 166, 255
LpnPI CCDG 9 cut(s) 37, 43, 85, 88, 115, 169, 335, 362, 387
LweI GCATC 2 cut(s) 131, 316
MaeIII GTNAC 3 cut(s) 97, 352, 358
MboII GAAGA 4 cut(s) 93, 332, 335, 347
MluCI AATT 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 4 cut(s) 82, 85, 358, 370
MseI TTAA 2 cut(s) 150, 234
MspI CCGG 2 cut(s) 24, 72
MspR9I CCNGG 2 cut(s) 103, 350
MvaI CCWGG 2 cut(s) 103, 350
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 167, 200
NcoI CCATGG 1 cut(s) 204
NlaIII CATG 2 cut(s) 140, 208
NlaIV GGNNCC 4 cut(s) 162, 257, 369, 397
NspV TTCGAA 1 cut(s) 268
PfeI GAWTC 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 101, 348
PspGI CCWGG 2 cut(s) 101, 348
PspN4I GGNNCC 4 cut(s) 162, 257, 369, 397
RsaI GTAC 3 cut(s) 7, 28, 397
RsaNI GTAC 3 cut(s) 6, 27, 396
SaqAI TTAA 2 cut(s) 150, 234
ScrFI CCNGG 2 cut(s) 103, 350
SetI ASST 4 cut(s) 96, 149, 369, 405
SfaNI GCATC 2 cut(s) 131, 316
SfuI TTCGAA 1 cut(s) 268
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 101, 348
StyI CCWWGG 3 cut(s) 204, 330, 399
TaaI ACNGT 3 cut(s) 10, 35, 358
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 297
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 2 cut(s) 150, 234
Tru9I TTAA 2 cut(s) 150, 234
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.