Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

13285737 .. 13286791

Gene Structure 1055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCGGAGAAGAAGGGAAGGAAAGAGGAGGTGGTGACCAGAGAGTACACCATCAACCTTCACAGACGCCTTCATAGCTGTACCTTTAAGAAGAAGGCTCCAAAGGCGATCAAGGAGATAAGGAAGTTTGCTGAGAAGGAAATGGGGACAAAGGATGTGAGAGTGGATGTTAAATTGAACAAGCAGATTTGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCAGAGTCCGAGTTGCTCGTAAGAGAAATGATGATGAAGATGCAAAGGAAGAGTTCTTCTCTCTTGTCACTGTTGCTGAAATCCCTGCTGAAGGACTCTCTGGCCTCGGCACTAAGATCATTGAAGAAGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

119

Amino Acids

13.82

Weight (kDa)

9.81

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	10 - 91	8e-43	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	47, 82
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	178, 347
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
AoxI	GGCC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	209
BccI	CCATC	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	215, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	215, 328
BseGI	GGATG	2 cut(s)	160, 172
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	41, 232
BshFI	GGCC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	108, 339
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	215, 328
BssMI	GATC	2 cut(s)	108, 339
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	267, 345
BstACI	GRCGYC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	132, 336
BstEII	GGTNACC	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	160, 172
BstKTI	GATC	2 cut(s)	111, 342
BstMBI	GATC	2 cut(s)	108, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 104
BstPI	GGTNACC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	160, 172
BtsIMutI	CAGTG	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	46, 81
CviJI	RGCY	3 cut(s)	78, 98, 327
CviKI_1	RGCY	3 cut(s)	78, 98, 327
CviQI	GTAC	2 cut(s)	46, 81
DdeI	CTNAG	2 cut(s)	132, 336
DpnI	GATC	2 cut(s)	110, 341
DpnII	GATC	2 cut(s)	108, 339
Eam1104I	CTCTTC	2 cut(s)	267, 345
EarI	CTCTTC	2 cut(s)	267, 345
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	333
Eco91I	GGTNACC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	34
FaiI	YATR	1 cut(s)	75
FaqI	GGGAC	1 cut(s)	160
FokI	GGATG	2 cut(s)	167, 179
HaeIII	GGCC	1 cut(s)	327
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	222, 228, 318
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	5 cut(s)	7, 206, 216, 227, 233
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	7 cut(s)	7, 12, 68, 80, 88, 130, 308
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 104
HpyF3I	CTNAG	2 cut(s)	132, 336
Hsp92I	GRCGYC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	108, 339
LmnI	GCTCC	2 cut(s)	103, 192
LpnPI	CCDG	3 cut(s)	52, 309, 321
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	34, 289
MalI	GATC	2 cut(s)	110, 341
MboI	GATC	2 cut(s)	108, 339
MboII	GAAGA	6 cut(s)	22, 103, 271, 272, 284, 359
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	237, 312
MnlI	CCTC	7 cut(s)	19, 22, 200, 210, 222, 338, 346
MseI	TTAA	3 cut(s)	87, 171, 358
MwoI	GCNNNNNNNGC	2 cut(s)	75, 104
NdeII	GATC	2 cut(s)	108, 339
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	2 cut(s)	34, 289
PfeI	GAWTC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	236, 312
PpsI	GAGTC	2 cut(s)	236, 312
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspEI	GGTNACC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	47, 82
RsaNI	GTAC	2 cut(s)	46, 81
SaqAI	TTAA	3 cut(s)	87, 171, 358
Sau3AI	GATC	2 cut(s)	108, 339
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	237, 312
SetI	ASST	6 cut(s)	33, 60, 80, 86, 202, 211
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	295
TasI	AATT	1 cut(s)	173
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	87, 171, 358
Tru9I	TTAA	3 cut(s)	87, 171, 358
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	34, 289
Tsp45I	GTSAC	2 cut(s)	34, 289
TspDTI	ATGAA	2 cut(s)	62, 273
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.