Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

652386 .. 653744

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1007100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGGAGAAGGGCCGCGGCAAGGGAAGAAAGGAGGAGGTAGTCACCAGAGAGTACACCATCAACCTCCACAAACGCTTGCATGGATGCACATTTAAGAAGAAGGCACCAAATGCGATAAGGGAAATCAGGAAGTTTGCTCAGAAGGCTATGGGAACCCCTGATGTCAGAGTGGATGTTAAGCTCAACAAGCACATATGGAGCCGTGGCATTCGGAGTGTGCCAAGAAGGGTACGCGTCCGCATTGCACGGAAGAGAAATGATGATGAAGATGCCAAGGAAGAGTTTTACTCGCTAGTCGCTGTCACGGAGGTCCCTCCAGAGGGATTGAGTGGTTTGGGCACCAAGGTGATCGATGAAGAAGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

124

Amino Acids

14.11

Weight (kDa)

9.99

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	13 - 94	3.8e-44	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	106, 341
AccII	CGCG	2 cut(s)	18, 237
AciI	CCGC	4 cut(s)	5, 16, 18, 241
AfaI	GTAC	2 cut(s)	56, 234
AfiI	CCNNNNNNNGG	3 cut(s)	22, 322, 323
AflIII	ACRYGT	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	2 cut(s)	184, 369
AluI	AGCT	2 cut(s)	184, 369
AoxI	GGCC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	13, 313
AsuHPI	GGTGA	2 cut(s)	37, 361
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	344
BanI	GGYRCC	2 cut(s)	106, 341
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	16, 19
BlsI	GCNGC	2 cut(s)	17, 20
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	13, 313
BmiI	GGNNCC	5 cut(s)	108, 157, 203, 315, 343
BmsI	GCATC	2 cut(s)	77, 262
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	16, 205, 276, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 322, 323
Bse3DI	GCAATG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	4 cut(s)	16, 205, 276, 345
BseGI	GGATG	2 cut(s)	92, 181
BseLI	CCNNNNNNNGG	3 cut(s)	22, 322, 323
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	344
Bsh1236I	CGCG	2 cut(s)	18, 237
BshFI	GGCC	1 cut(s)	15
BshNI	GGYRCC	2 cut(s)	106, 341
BshVI	ATCGAT	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	22, 322, 323
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	4 cut(s)	5, 16, 18, 241
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	354
BspFNI	CGCG	2 cut(s)	18, 237
BspLI	GGNNCC	5 cut(s)	108, 157, 203, 315, 343
BspT107I	GGYRCC	2 cut(s)	106, 341
BsrDI	GCAATG	1 cut(s)	243
BssECI	CCNNGG	4 cut(s)	16, 205, 276, 345
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	276, 345
Bst6I	CTCTTC	2 cut(s)	248, 276
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	2 cut(s)	16, 205
BstF5I	GGATG	2 cut(s)	92, 181
BstFNI	CGCG	2 cut(s)	18, 237
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 146, 190
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	2 cut(s)	18, 237
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	16, 205
BtsCI	GGATG	2 cut(s)	92, 181
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	13, 313
Cfr42I	CCGCGG	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	55, 233
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	15, 149, 184, 204, 369
CviKI_1	RGCY	5 cut(s)	15, 149, 184, 204, 369
CviQI	GTAC	2 cut(s)	55, 233
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	248, 276
EarI	CTCTTC	2 cut(s)	248, 276
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	276, 345
Eco47I	GGWCC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	276, 345
ErhI	CCWWGG	2 cut(s)	276, 345
FaeI	CATG	1 cut(s)	86
FaiI	YATR	4 cut(s)	84, 152, 197, 199
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	16, 19
FokI	GGATG	2 cut(s)	99, 188
Fsp4HI	GCNGC	2 cut(s)	16, 19
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	16, 19
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	37, 361
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	144, 170, 216
Hpy188III	TCNNGA	2 cut(s)	130, 320
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	4 cut(s)	4, 97, 139, 222
HpyCH4V	TGCA	3 cut(s)	82, 90, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 146, 190
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	86
KspI	CCGCGG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	4 cut(s)	61, 115, 174, 333
LweI	GCATC	2 cut(s)	77, 262
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	43, 304
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	6 cut(s)	39, 112, 265, 281, 293, 371
MhlI	GDGCHC	1 cut(s)	344
MluI	ACGCGT	1 cut(s)	235
MnlI	CCTC	6 cut(s)	28, 31, 77, 304, 316, 327
MseI	TTAA	2 cut(s)	96, 180
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	210
MvnI	CGCG	2 cut(s)	18, 237
MwoI	GCNNNNNNNGC	3 cut(s)	113, 146, 190
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	5 cut(s)	108, 157, 203, 315, 343
NmuCI	GTSAC	2 cut(s)	43, 304
OliI	CACNNNNGTG	1 cut(s)	347
PctI	GAATGC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	17, 20
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspN4I	GGNNCC	5 cut(s)	108, 157, 203, 315, 343
PspPI	GGNCC	2 cut(s)	13, 313
PspPPI	RGGWCCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	56, 234
RsaNI	GTAC	2 cut(s)	55, 233
RseI	CAYNNNNRTG	1 cut(s)	347
SacII	CCGCGG	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	96, 180
SatI	GCNGC	2 cut(s)	16, 19
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	2 cut(s)	13, 313
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	6 cut(s)	42, 69, 186, 315, 351, 371
SfaNI	GCATC	2 cut(s)	77, 262
Sfr303I	CCGCGG	1 cut(s)	19
SgrBI	CCGCGG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	347
SsiI	CCGC	4 cut(s)	5, 16, 18, 241
SspMI	CTAG	1 cut(s)	296
StyI	CCWWGG	2 cut(s)	276, 345
TaqI	TCGA	1 cut(s)	354
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	2 cut(s)	18, 21
Tru1I	TTAA	2 cut(s)	96, 180
Tru9I	TTAA	2 cut(s)	96, 180
TseFI	GTSAC	2 cut(s)	43, 304
Tsp45I	GTSAC	2 cut(s)	43, 304
TspDTI	ATGAA	2 cut(s)	282, 372
TspGWI	ACGGA	2 cut(s)	265, 323
VpaK11BI	GGWCC	1 cut(s)	313
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.