Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

6336504 .. 6338083

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGGAGAAGACGGGTCGAGGAAGAAAAGAAGAGGTCGTCACCAGAGAGTACACCGTCAATCTTCACAAGCGACTCCATGGATGCACATTCAAAAAGAAGGCACCAAATGCCATCAAAGAGATTCGGAAGTTTGCTCAGAAGGCTATGGGAACCACTGATGTCAGGGTCGATGTGAAGCTCAACAAGCACATTTGGAGCCGGGGCATTCGAAGTGTGCCAAGGAGGGTTCGTGTACGCATTGCTCGCAGAAGAAACGAGGAGGAAGATGCTAAAGAGGAGCTATACTCTCTGGTAACAGTCACTGAGGTTCCACCAGAGGGTCTCAAGGGATTAGGCACCACAGTCATCGATGCAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

121

Amino Acids

13.91

Weight (kDa)

10.05

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	12 - 93	1.4e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	103, 338
AfaI	GTAC	2 cut(s)	53, 237
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	181, 283
AluI	AGCT	2 cut(s)	181, 283
Alw26I	GTCTC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	103, 338
BbsI	GAAGAC	1 cut(s)	17
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	5 cut(s)	105, 154, 200, 312, 340
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	3 cut(s)	74, 259, 343
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	79, 202, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	79, 202, 221
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	152, 297
BseRI	GAGGAG	2 cut(s)	275, 293
BshNI	GGYRCC	2 cut(s)	103, 338
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	151, 298
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	5 cut(s)	105, 154, 200, 312, 340
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	2 cut(s)	103, 338
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	79, 202, 221
BssT1I	CCWWGG	2 cut(s)	79, 221
Bst4CI	ACNGT	3 cut(s)	58, 301, 346
Bst6I	CTCTTC	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	138, 306
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 143, 187, 246
BstSCI	CCNGG	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	156, 303
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	52, 236
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	146, 181, 201, 283
CviKI_1	RGCY	4 cut(s)	146, 181, 201, 283
CviQI	GTAC	2 cut(s)	52, 236
DdeI	CTNAG	2 cut(s)	138, 306
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	79, 221
Eco31I	GGTCTC	1 cut(s)	329
EcoT14I	CCWWGG	2 cut(s)	79, 221
ErhI	CCWWGG	2 cut(s)	79, 221
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 149, 286
FatI	CATG	1 cut(s)	79
FokI	GGATG	1 cut(s)	96
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	2 cut(s)	75, 124
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	54, 236
Hpy188I	TCNGA	2 cut(s)	129, 141
Hpy8I	GTNNAC	2 cut(s)	54, 236
HpyAV	CCTTC	2 cut(s)	94, 136
HpyCH4III	ACNGT	3 cut(s)	58, 301, 346
HpyCH4V	TGCA	2 cut(s)	87, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 143, 187, 246
HpyF3I	CTNAG	2 cut(s)	138, 306
Hsp92II	CATG	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	198, 280
LpnPI	CCDG	5 cut(s)	58, 151, 215, 278, 330
LweI	GCATC	3 cut(s)	74, 259, 343
MaeIII	GTNAC	3 cut(s)	40, 295, 301
MboII	GAAGA	6 cut(s)	22, 36, 44, 56, 264, 278
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	8 cut(s)	14, 28, 219, 253, 256, 271, 301, 313
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	110, 143, 187, 246
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	79
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	5 cut(s)	105, 154, 200, 312, 340
NmuCI	GTSAC	2 cut(s)	40, 301
NspV	TTCGAA	1 cut(s)	211
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PspN4I	GGNNCC	5 cut(s)	105, 154, 200, 312, 340
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	53, 237
RsaNI	GTAC	2 cut(s)	52, 236
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	4 cut(s)	39, 183, 285, 312
SfaNI	GCATC	3 cut(s)	74, 259, 343
SfuI	TTCGAA	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	79, 221
TaaI	ACNGT	3 cut(s)	58, 301, 346
TaqI	TCGA	4 cut(s)	19, 171, 211, 351
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	2 cut(s)	163, 310
TseFI	GTSAC	2 cut(s)	40, 301
Tsp45I	GTSAC	2 cut(s)	40, 301
TspRI	CASTG	2 cut(s)	163, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.