Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

932740 .. 934327

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G010000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGGAGAAGGGCGGAAAAGGAAGAAAGGAAGAGGTGGTTACCAGGGAGTACACCATCAACCTCCACAAACGCTTGCATGGATGCACATTTAAAAAGAAGGCTCCAAATGCGATAAAGGAAATCAGGAAGTTTGCTGAAAAGGCTATGGGTACTACAGATGTTAGAGTGGATGTTAAGCTCAACAAGCACATTTGGAGCCGTGGGATTCGAAGTGTGCCTAGAAGGATACGCGTCCGCATTGCACGGAAGAGAAATGATGAAGAAGATGCCAAGGAGGAGTTATACTCACTAGTCACTGTTACAGAGGTCCCTCCAGAGGGATTTACTGGTTTGGGCACCAAGGTGATCGACGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

122

Amino Acids

13.9

Weight (kDa)

9.75

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	5, 15, 238
AfaI	GTAC	2 cut(s)	53, 154
AfiI	CCNNNNNNNGG	2 cut(s)	319, 320
AflIII	ACRYGT	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	44
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	222
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	2 cut(s)	222, 293
BfmI	CTRYAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	4 cut(s)	105, 200, 312, 340
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	2 cut(s)	74, 259
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	211
BsaJI	CCNNGG	4 cut(s)	45, 202, 273, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 320
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	4 cut(s)	45, 202, 273, 342
BseGI	GGATG	2 cut(s)	89, 178
BseLI	CCNNNNNNNGG	2 cut(s)	319, 320
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	319, 320
BsmFI	GGGAC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	3 cut(s)	5, 15, 238
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	105, 200, 312, 340
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	45, 202, 273, 342
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	273, 342
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	27, 245
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	202
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	89, 178
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 143, 187
BstNI	CCWGG	1 cut(s)	46
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	89, 178
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	52, 153
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	104, 146, 181, 201
CviKI_1	RGCY	4 cut(s)	104, 146, 181, 201
CviQI	GTAC	2 cut(s)	52, 153
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraI	TTTAAA	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	27, 245
EarI	CTCTTC	2 cut(s)	27, 245
EciI	GGCGGA	2 cut(s)	20, 30
Eco130I	CCWWGG	2 cut(s)	273, 342
Eco47I	GGWCC	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	273, 342
ErhI	CCWWGG	2 cut(s)	273, 342
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 149, 286
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	79
FokI	GGATG	2 cut(s)	96, 185
FspBI	CTAG	2 cut(s)	222, 293
GsuI	CTGGAG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	127, 317
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	3 cut(s)	4, 94, 219
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	79, 87, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 143, 187
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	109, 198
LpnPI	CCDG	5 cut(s)	31, 58, 112, 315, 330
LweI	GCATC	2 cut(s)	74, 259
MaeI	CTAG	2 cut(s)	222, 293
MaeIII	GTNAC	3 cut(s)	40, 295, 301
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	5 cut(s)	36, 44, 262, 275, 278
MhlI	GDGCHC	1 cut(s)	341
MluI	ACGCGT	1 cut(s)	232
MnlI	CCTC	6 cut(s)	28, 74, 271, 301, 313, 324
MseI	TTAA	2 cut(s)	93, 177
MslI	CAYNNNNRTG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	110, 143, 187
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	4 cut(s)	105, 200, 312, 340
NmuCI	GTSAC	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	44
PspEI	GGTNACC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	4 cut(s)	105, 200, 312, 340
PspPI	GGNCC	1 cut(s)	310
PspPPI	RGGWCCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	53, 154
RsaNI	GTAC	2 cut(s)	52, 153
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	93, 177
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	39, 66, 183, 312, 348
SfaNI	GCATC	2 cut(s)	74, 259
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	211
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	292
SsiI	CCGC	3 cut(s)	5, 15, 238
SspMI	CTAG	2 cut(s)	222, 293
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	2 cut(s)	273, 342
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	211, 351
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	93, 177
Tru9I	TTAA	2 cut(s)	93, 177
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	310
XspI	CTAG	2 cut(s)	222, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.