Rmu_co8293339.1_g000001

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8293339.1
OG0001234
Physical Location & Seq
Reverse (-)
115 .. 516
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8293339.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgtgcattttattggcttgtatcttccattctgttgcatacttggtggttgttctcacattcaaaaagaaggcaccaaatgccatcaaagagattcggaagtttgctcagaaggctatgggaacgactgacgtcagggtcgatgtgaagctcaacaagcacatttggagccggggcattcgaagtgtgccaagaagggttcgtgtacgcattgctcgcagaagaaacgaggaggaagatgctaaagaggagttatactctctggtaacagtcactgaggttccaccagcgggtctcaagggattaggcaccacagtcatcgatgcagatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L31e

Protein Analysis

111

Amino Acids

12.53

Weight (kDa)

9.88

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 2 cut(s) 73, 308
AciI CCGC 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 173
AsuII TTCGAA 1 cut(s) 181
BanI GGYRCC 2 cut(s) 73, 308
BccI CCATC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 4 cut(s) 75, 170, 282, 310
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 229, 313
BoxI GACNNNNGTC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 242, 274
Bpu14I TTCGAA 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 122, 267
BseRI GAGGAG 2 cut(s) 245, 263
BshNI GGYRCC 2 cut(s) 73, 308
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 181
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 121, 268
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 4 cut(s) 75, 170, 282, 310
BspT104I TTCGAA 1 cut(s) 181
BspT107I GGYRCC 2 cut(s) 73, 308
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 271, 316
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 108, 276
BstMAI GTCTC 1 cut(s) 299
BstMWI GCNNNNNNNGC 4 cut(s) 80, 113, 157, 216
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 206
CviJI RGCY 4 cut(s) 17, 116, 151, 171
CviKI_1 RGCY 4 cut(s) 17, 116, 151, 171
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 108, 276
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 299
FaiI YATR 3 cut(s) 40, 119, 256
FauI CCCGC 1 cut(s) 283
HapII CCGG 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 132
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 99, 111
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 3 cut(s) 64, 106, 189
HpyCH4III ACNGT 2 cut(s) 271, 316
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 6, 38, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 113, 157, 216
HpyF3I CTNAG 2 cut(s) 108, 276
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 121, 185, 248, 300
LweI GCATC 2 cut(s) 229, 313
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 265, 271
MboII GAAGA 3 cut(s) 16, 234, 248
MnlI CCTC 4 cut(s) 223, 226, 241, 271
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 80, 113, 157, 216
NciI CCSGG 1 cut(s) 173
NlaIV GGNNCC 4 cut(s) 75, 170, 282, 310
NmuCI GTSAC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 131
PspN4I GGNNCC 4 cut(s) 75, 170, 282, 310
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 173
SetI ASST 3 cut(s) 135, 153, 282
SfaNI GCATC 2 cut(s) 229, 313
SfuI TTCGAA 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 271, 316
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 141, 181, 321
TfiI GAWTC 1 cut(s) 94
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspRI CASTG 1 cut(s) 280
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.