Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

36116148 .. 36117863

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGGAGAAGACGAGTCGCGGAAGAAAAGAAGAGGTGGTGACCAGAGAGTACACCATCAATCTTCACAAGCGCCTCCATGGATGCACATTCAAAAAGAAGGCACCAAATGCCATCAAGGAGATTCGGAAGTTTGCTCAGAAGGCCATGGGAACCACAGATGTCAGGGTCGATGTGAAGCTCAACAAGCACATTTGGAGTCGGGGGATCCGAAGTGTGCCGAGGAGGGTTCGTGTTCGCATTGCTCGCAGAAGGAACGATGAGGAAGATGCCAAAAAGGAGCTATACTCTCTGGTAACAGTCACTGAGGTTCCACCAGAGGGTCTCAAGGGATTAGGCACTAAGGTCATCGATGGAGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

10.24

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	12 - 92	1.2e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	202, 215
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	181, 283
AluI	AGCT	2 cut(s)	181, 283
Alw26I	GTCTC	2 cut(s)	329, 351
AlwI	GGATC	2 cut(s)	202, 215
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	17
BccI	CCATC	3 cut(s)	65, 122, 347
BcoDI	GTCTC	2 cut(s)	329, 351
BfoI	RGCGCY	1 cut(s)	76
BmiI	GGNNCC	4 cut(s)	105, 154, 209, 312
BmsI	GCATC	2 cut(s)	74, 259
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	79, 147, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	79, 147, 221
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	152, 297
BseRI	GAGGAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	329, 351
BsmBI	CGTCTC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	207
Bsp19I	CCATGG	2 cut(s)	79, 147
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	2 cut(s)	151, 298
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	105, 154, 209, 312
BspPI	GGATC	2 cut(s)	202, 215
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	79, 147, 221
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	79, 147
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	138, 306, 342
BstDSI	CCRYGG	2 cut(s)	79, 147
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	329, 351
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 143, 187, 246
BstPI	GGTNACC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	2 cut(s)	79, 147
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	80, 148
CviJI	RGCY	3 cut(s)	146, 181, 283
CviKI_1	RGCY	3 cut(s)	146, 181, 283
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	138, 306, 342
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	79, 147
Eco31I	GGTCTC	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	79, 147
ErhI	CCWWGG	2 cut(s)	79, 147
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	2 cut(s)	83, 151
FaiI	YATR	3 cut(s)	81, 149, 286
FatI	CATG	2 cut(s)	79, 147
FokI	GGATG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	83, 151
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	16, 124, 199
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	129, 141, 212
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	94, 136, 246
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 143, 187, 246
HpyF3I	CTNAG	3 cut(s)	138, 306, 342
Hsp92II	CATG	2 cut(s)	83, 151
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	4 cut(s)	58, 151, 278, 330
LweI	GCATC	2 cut(s)	74, 259
MaeIII	GTNAC	3 cut(s)	40, 295, 301
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	5 cut(s)	22, 36, 44, 56, 278
MflI	RGATCY	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	25, 208
MnlI	CCTC	7 cut(s)	28, 86, 216, 219, 256, 301, 313
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	110, 143, 187, 246
NcoI	CCATGG	2 cut(s)	79, 147
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	83, 151
NlaIV	GGNNCC	4 cut(s)	105, 154, 209, 312
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	40, 301
PcsI	WCGNNNNNNNCGW	2 cut(s)	208, 357
PfeI	GAWTC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	24, 207
PpsI	GAGTC	2 cut(s)	24, 207
PspEI	GGTNACC	1 cut(s)	40
PspN4I	GGNNCC	4 cut(s)	105, 154, 209, 312
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	207
SchI	GAGTC	2 cut(s)	25, 208
SetI	ASST	5 cut(s)	39, 183, 285, 312, 348
SfaNI	GCATC	2 cut(s)	74, 259
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SsiI	CCGC	1 cut(s)	21
StyI	CCWWGG	2 cut(s)	79, 147
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	171, 351
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	40, 301
Tsp45I	GTSAC	2 cut(s)	40, 301
TspRI	CASTG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.