Rmu_sc0007304.1_g000001

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007304.1
OG0001234
Physical Location & Seq
Forward (+)
1 .. 427
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007304.1_g000001.1.cds

Sequence Viewer

Length: 325 bp
gcaagacaaggccggaaaaggaagaaaggaggaggtcgttaccagggagtataccatcaatctccacaagcgcttgcatggatgcacatttaaaaagaaggctccaaacgccataaaggaaatcaggaagtttgctcaaaaggccatggctactactgatgtcagagtggatgttaaactcaacaagcacatttggagccgtgggattcgaagtgtgccaagaagggttcgcgtccgaattgcacgaaagagaaaaatgaagaagatgccaatgaagagttctactccctggttactgttacagaggttccgccagagggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L31e

Protein Analysis

107

Amino Acids

12.76

Weight (kDa)

11.7

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 232
AciI CCGC 1 cut(s) 311
AfeI AGCGCT 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 317
AjnI CCWGG 2 cut(s) 42, 288
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 2 cut(s) 10, 142
AspLEI GCGC 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 209
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 44, 290
BfoI RGCGCY 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 44, 290
BmiI GGNNCC 3 cut(s) 103, 198, 309
BmrFI CCNGG 2 cut(s) 44, 290
BmsI GCATC 2 cut(s) 72, 256
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu14I TTCGAA 1 cut(s) 209
BsaJI CCNNGG 4 cut(s) 43, 145, 200, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 317
BseBI CCWGG 2 cut(s) 44, 290
BseDI CCNNGG 4 cut(s) 43, 145, 200, 288
BseGI GGATG 2 cut(s) 87, 176
BseLI CCNNNNNNNGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 12, 144
BsiSI CCGG 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 317
BsnI GGCC 2 cut(s) 12, 144
Bsp119I TTCGAA 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 1 cut(s) 311
BspANI GGCC 2 cut(s) 12, 144
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 103, 198, 309
BspT104I TTCGAA 1 cut(s) 209
BssECI CCNNGG 4 cut(s) 43, 145, 200, 288
BssNAI GTATAC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 44, 290
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 75
BstDSI CCRYGG 2 cut(s) 145, 200
BstF5I GGATG 2 cut(s) 87, 176
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 108, 141
BstNI CCWGG 2 cut(s) 44, 290
BstSCI CCNGG 2 cut(s) 42, 288
BstUI CGCG 1 cut(s) 232
BstZ17I GTATAC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 12, 144
BtgI CCRYGG 2 cut(s) 145, 200
BtsCI GGATG 2 cut(s) 87, 176
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 73
CseI GACGC 1 cut(s) 221
CviAII CATG 2 cut(s) 78, 146
CviJI RGCY 5 cut(s) 12, 102, 144, 150, 199
CviKI_1 RGCY 5 cut(s) 12, 102, 144, 150, 199
DraI TTTAAA 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 42, 288
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 81, 149
FaiI YATR 4 cut(s) 52, 79, 114, 147
FatI CATG 2 cut(s) 77, 145
FblI GTMKAC 1 cut(s) 51
FokI GGATG 2 cut(s) 94, 183
GlaI GCGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 12, 144
HapII CCGG 1 cut(s) 13
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 81, 149
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 165, 237
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 92, 217
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 77, 85, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 141
Hsp92II CATG 2 cut(s) 81, 149
HspAI GCGC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 107, 196
LpnPI CCDG 6 cut(s) 26, 29, 56, 110, 275, 302
LweI GCATC 2 cut(s) 72, 256
MaeIII GTNAC 3 cut(s) 38, 292, 298
MboII GAAGA 4 cut(s) 34, 272, 275, 287
MluCI AATT 1 cut(s) 238
MnlI CCTC 4 cut(s) 23, 26, 298, 310
MseI TTAA 2 cut(s) 91, 175
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 2 cut(s) 44, 290
MvaI CCWGG 2 cut(s) 44, 290
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 108, 141
NcoI CCATGG 1 cut(s) 145
NlaIII CATG 2 cut(s) 81, 149
NlaIV GGNNCC 3 cut(s) 103, 198, 309
NspV TTCGAA 1 cut(s) 209
PfeI GAWTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 42, 288
PspGI CCWGG 2 cut(s) 42, 288
PspN4I GGNNCC 3 cut(s) 103, 198, 309
SaqAI TTAA 2 cut(s) 91, 175
ScrFI CCNGG 2 cut(s) 44, 290
SetI ASST 2 cut(s) 37, 309
SfaNI GCATC 2 cut(s) 72, 256
SfuI TTCGAA 1 cut(s) 209
Sse9I AATT 1 cut(s) 238
SsiI CCGC 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 42, 288
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 209
TasI AATT 1 cut(s) 238
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 91, 175
Tru9I TTAA 2 cut(s) 91, 175
TspDTI ATGAA 2 cut(s) 273, 288
XmiI GTMKAC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.