Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

5557307 .. 5559107

Gene Structure 1801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG072400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGACCCCTATAAAAGGTGTACAAAACTAGGGTTTAGCGTCTCTTGTTATATTGCTCTCGCTTCCGCCTCTCTCTCATTCTGCGCATCGCTTCAAGGTAGGGTTGAAGAAGAGGAGAGTGTGAAAATGGTTGAGAAGACTAAGGGACGAAAGGAGGAGGTCGTCACCAGGGAGTTCACCATCAACCTCCACAAGCGCCTCCATGGCTGCACATTCAAGAAGAAGGCTCCCAATGCCATCAAGGAGATCAGGAAGTTTGCCCAGAAGGCAATGGGAACAATTGATGTCAGGGTGGATGTGAAGCTGAACAAGCAAATCTGGAGCAGAGGAATCAGGAGTGTCCCAAGAAGAATCAGGGTTCGCATTGCTCGCAAGAGGAATGATGATGAAGATGCAAAGGAAGAGCTATACTCCCTTGTGACTGTTGCAGAGATCCCAGCTGAAGGACTGAAGGGCTTGGGCACCAAGGTCATTGAAGAGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

162

Amino Acids

18.43

Weight (kDa)

9.56

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	53 - 134	7.5e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	461
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	427
AcuI	CTGAAG	2 cut(s)	462, 470
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	15, 443
AgsI	TTSAA	4 cut(s)	95, 107, 217, 476
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	304, 406, 440
AluI	AGCT	3 cut(s)	304, 406, 440
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	86, 198
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	157, 169
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	188, 245
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	199
BglI	GCCNNNNNGGC	2 cut(s)	204, 266
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 228, 463
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	95, 382
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	168, 202, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 443
Bse3DI	GCAATG	2 cut(s)	276, 363
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	168, 202, 465
BseGI	GGATG	2 cut(s)	301, 487
BseLI	CCNNNNNNNGG	2 cut(s)	15, 443
BseMI	GCAATG	2 cut(s)	276, 363
BseRI	GAGGAG	2 cut(s)	128, 170
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	461
BslFI	GGGAC	2 cut(s)	159, 326
BslI	CCNNNNNNNGG	2 cut(s)	15, 443
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	159, 326
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	246, 432
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	6, 228, 463
BspPI	GGATC	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	276, 363
BsrGI	TGTACA	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	168, 202, 465
BssMI	GATC	2 cut(s)	246, 432
BssT1I	CCWWGG	2 cut(s)	202, 465
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	3 cut(s)	105, 396, 471
BstAUI	TGTACA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	301, 487
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	86, 198
BstKTI	GATC	2 cut(s)	249, 435
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	246, 432
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 233, 266, 310, 369
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	301, 487
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	2 cut(s)	86, 198
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	6 cut(s)	207, 227, 304, 406, 440, 456
CviKI_1	RGCY	6 cut(s)	207, 227, 304, 406, 440, 456
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	248, 434
DpnII	GATC	2 cut(s)	246, 432
Eam1104I	CTCTTC	3 cut(s)	105, 396, 471
EarI	CTCTTC	3 cut(s)	105, 396, 471
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	202, 465
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	462, 470
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	202, 465
ErhI	CCWWGG	2 cut(s)	202, 465
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	12, 51, 204, 409
FaqI	GGGAC	2 cut(s)	159, 326
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	2 cut(s)	85, 197
GluI	GCNGC	1 cut(s)	208
GsaI	CCCAGC	1 cut(s)	440
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	199
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	86, 198
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	84, 196
HinP1I	GCGC	2 cut(s)	84, 196
HinfI	GANTC	2 cut(s)	330, 351
HphI	GGTGA	2 cut(s)	157, 169
Hpy166II	GTNNAC	2 cut(s)	21, 177
Hpy188III	TCNNGA	4 cut(s)	217, 250, 319, 334
Hpy8I	GTNNAC	2 cut(s)	21, 177
HpyAV	CCTTC	4 cut(s)	217, 259, 437, 445
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	210, 395, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 233, 266, 310, 369
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	84, 196
Kzo9I	GATC	2 cut(s)	246, 432
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	232, 321
LpnPI	CCDG	9 cut(s)	154, 181, 235, 274, 275, 304, 319, 340, 450
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	95, 382
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	163, 418
MalI	GATC	2 cut(s)	248, 434
MboI	GATC	2 cut(s)	246, 432
MboII	GAAGA	8 cut(s)	119, 122, 148, 232, 360, 401, 413, 488
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	9 cut(s)	79, 106, 148, 151, 197, 209, 320, 369, 472
MspA1I	CMGCKG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	5 cut(s)	204, 233, 266, 310, 369
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	246, 432
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	6, 228, 463
NmuCI	GTSAC	2 cut(s)	163, 418
NsbI	TGCGCA	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	330, 351
PkrI	GCNGC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	6, 228, 463
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	2 cut(s)	246, 432
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	8 cut(s)	20, 100, 162, 189, 306, 408, 442, 471
SfaNI	GCATC	2 cut(s)	95, 382
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	202, 465
TaaI	ACNGT	1 cut(s)	424
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	330, 351
TseFI	GTSAC	2 cut(s)	163, 418
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	2 cut(s)	163, 418
TspDTI	ATGAA	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.