Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039322.1

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Forward (+)

1034 .. 2331

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039322.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 406 bp

atggacccctataaaaggtgtacaaaactagggtttagcgtctcttgttatattgctctcgcttccgcctctctctcattctgcgcatcgcttcaaggtacggttgaagaagaggagagtgtgaaaatggttgagaagactaagggacgaaaggaggaggtcgtcaccagggagttcaccatcaacctccacaagcgcctccatggctgcacattcaagaagaaggctcccaatgccatcaaggagatcaggaagtttgcccagaaggcaatgggaacaattgatgtcagggtggatgtgaagctgaacaagcaaatctggagccgaggaatcaggagtgtcccaagaagaatcagggttcgcattgctcgcaagaggaatgatgatgaagatgcaaaggaagagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

9.89

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
AciI	CCGC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	22, 100
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	95, 107, 217
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	86, 198
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	157, 169
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	188, 245
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	199
BglI	GCCNNNNNGGC	2 cut(s)	204, 266
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 228, 323
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	95, 382
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	168, 202, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	276, 363
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	168, 202, 325
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	2 cut(s)	276, 363
BseRI	GAGGAG	2 cut(s)	128, 170
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	159, 326
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	159, 326
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	6, 228, 323
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	2 cut(s)	276, 363
BsrGI	TGTACA	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	168, 202, 325
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	105, 396
BstAUI	TGTACA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	86, 198
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 233, 266, 310, 369
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	2 cut(s)	86, 198
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	21, 99
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	4 cut(s)	207, 227, 304, 324
CviKI_1	RGCY	4 cut(s)	207, 227, 304, 324
CviQI	GTAC	2 cut(s)	21, 99
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	105, 396
EarI	CTCTTC	2 cut(s)	105, 396
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	1 cut(s)	206
FaiI	YATR	3 cut(s)	12, 51, 204
FaqI	GGGAC	2 cut(s)	159, 326
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	2 cut(s)	85, 197
GluI	GCNGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	199
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	86, 198
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	84, 196
HinP1I	GCGC	2 cut(s)	84, 196
HinfI	GANTC	2 cut(s)	330, 351
HphI	GGTGA	2 cut(s)	157, 169
Hpy166II	GTNNAC	2 cut(s)	21, 177
Hpy188III	TCNNGA	4 cut(s)	217, 250, 319, 334
Hpy8I	GTNNAC	2 cut(s)	21, 177
HpyAV	CCTTC	2 cut(s)	217, 259
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	210, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 233, 266, 310, 369
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	84, 196
Kzo9I	GATC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	232, 321
LpnPI	CCDG	8 cut(s)	154, 181, 235, 274, 275, 304, 319, 340
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	95, 382
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	6 cut(s)	119, 122, 148, 232, 360, 401
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	8 cut(s)	79, 106, 148, 151, 197, 209, 320, 369
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	5 cut(s)	204, 233, 266, 310, 369
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	6, 228, 323
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	163
NsbI	TGCGCA	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	330, 351
PkrI	GCNGC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	6, 228, 323
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	22, 100
RsaNI	GTAC	2 cut(s)	21, 99
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	5 cut(s)	20, 100, 162, 189, 306
SfaNI	GCATC	2 cut(s)	95, 382
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	103
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	330, 351
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.