Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001234

Physical Location & Seq

Genomic Coordinates Reverse (-)

6150757 .. 6152576

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTCTCAAAGATCTAATCTTTCAAGGGTATTGGCCATATATAATTATTGAGTTATGGATGGTGTGTTTGGCAGGTAGGGTTGAAGAAGGGGAGAGTGTGAAAATGGTTGAGAAGACTAAGGGACGAAAGGAGGAGGTCGTCACCAGGGAGTTCACCATCAACCTCCACAAGCGCCTCCATGGCTGCACATTCAAGAAGAAGGCTCCCAATGCCATCAAGGAGATCAGGAAGTTTGCCCAGAAGGCAATGGGAACAATTGATGTCAGGGTGGATGTGAAGCTGAACAAACAAATCTGGAGCAGAGGAATCAGGAGTGTCCCAAGAAGAATCAGGGTTCGCATTGCTCGCAAGAGGAATGATGATGAAGATGCAAAGGAAGAGCTATACTCCCTTGTGACTGTTGCAGAGATCCCAGCTGAAGGACTGAAGGGCTTGGGCACCAAGGTCATTGAAGAGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

155

Amino Acids

17.95

Weight (kDa)

9.54

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	46 - 127	6.7e-42	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19740 AT4G26230 AT5G56710
fragaria_vesca	FvH4_1g06780 FvH4_3g43260 FvH4_7g00730
malus_domestica	MD02G1072600.v1.1 MD02G1315000.v1.1 MD07G1007100.v1.1 MD15G1202200.v1.1
prunus_persica	Prupe.2G010000_v2.0.a1 Prupe.6G022500_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1 Prupe.7G215000_v2.0.a1
pyrus_communis	pycom02g05660 pycom02g26400 pycom07g00560 pycom15g17960
rosa_chinensis	RchiOBHm_Chr1g0314951 RchiOBHm_Chr1g0319501 RchiOBHm_Chr2g0092551 RchiOBHm_Chr5g0077321
rosa_laevigata	RLG00000030752 RLG00000036685
rosa_multiflora	Rmu_co8293339.1_g000001 Rmu_sc0000433.1_g000029 Rmu_sc0007304.1_g000001 Rmu_sc0039322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004590 Rroxscaffold_2G00148980 Rroxscaffold_4G00331650
rosa_rugosa	Rorug01G0003400 Rorug01G0003500 Rorug02G0027400 Rorug02G0027500 Rorug02G0027600 Rorug02G0027600 Rorug05G0453700
rosa_samantha	Rh1AG014200 Rh1BG005900 Rh1CG040600 Rh1DG007800 Rh1DG029000 Rh2AG073300 Rh2BG074200 Rh2CG075300 Rh2DG072400 Rh5AG508900 Rh5BG530200 Rh5CG554600 Rh5DG542500
rosa_wichuraiana	Rw1G003220 Rw2G005960 Rw5G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	441, 449
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	26, 86, 196, 455
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	283, 385, 419
AluI	AGCT	3 cut(s)	283, 385, 419
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	136, 148
BaeGI	GKGCMC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	3 cut(s)	55, 167, 224
BciT130I	CCWGG	1 cut(s)	148
BfoI	RGCGCY	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	65
BglI	GCCNNNNNGGC	2 cut(s)	183, 245
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	207, 442
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	147, 181, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	255, 342
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	147, 181, 444
BseGI	GGATG	3 cut(s)	66, 280, 466
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	2 cut(s)	255, 342
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	138, 305
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	138, 305
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	13, 225, 411
Bsp19I	CCATGG	1 cut(s)	181
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	207, 442
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	255, 342
BssECI	CCNNGG	3 cut(s)	147, 181, 444
BssMI	GATC	3 cut(s)	13, 225, 411
BssT1I	CCWWGG	2 cut(s)	181, 444
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	375, 450
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	66, 280, 466
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	16, 228, 414
BstMBI	GATC	3 cut(s)	13, 225, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 212, 245, 348
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	13, 411
BstYI	RGATCY	2 cut(s)	13, 411
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	66, 280, 466
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	177
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	7 cut(s)	37, 186, 206, 283, 385, 419, 435
CviKI_1	RGCY	7 cut(s)	37, 186, 206, 283, 385, 419, 435
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	3 cut(s)	15, 227, 413
DpnII	GATC	3 cut(s)	13, 225, 411
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	2 cut(s)	375, 450
EarI	CTCTTC	2 cut(s)	375, 450
Eco130I	CCWWGG	2 cut(s)	181, 444
Eco57I	CTGAAG	2 cut(s)	441, 449
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	181, 444
ErhI	CCWWGG	2 cut(s)	181, 444
FaeI	CATG	1 cut(s)	185
FaiI	YATR	6 cut(s)	40, 42, 44, 58, 183, 388
FaqI	GGGAC	2 cut(s)	138, 305
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	2 cut(s)	73, 287
Fsp4HI	GCNGC	1 cut(s)	187
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	309, 330
HphI	GGTGA	2 cut(s)	136, 148
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188III	TCNNGA	4 cut(s)	196, 229, 298, 313
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	5 cut(s)	83, 196, 238, 416, 424
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	3 cut(s)	189, 374, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 212, 245, 348
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	13, 225, 411
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	211, 300
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	361
MaeIII	GTNAC	2 cut(s)	142, 397
MalI	GATC	3 cut(s)	15, 227, 413
MboI	GATC	3 cut(s)	13, 225, 411
MboII	GAAGA	7 cut(s)	98, 127, 211, 339, 380, 392, 467
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	2 cut(s)	13, 411
MhlI	GDGCHC	1 cut(s)	443
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	2 cut(s)	45, 258
MluNI	TGGCCA	1 cut(s)	37
MnlI	CCTC	7 cut(s)	127, 130, 176, 188, 299, 348, 451
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
Msp20I	TGGCCA	1 cut(s)	37
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	4 cut(s)	183, 212, 245, 348
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	3 cut(s)	13, 225, 411
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	2 cut(s)	207, 442
NmuCI	GTSAC	2 cut(s)	142, 397
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	309, 330
PkrI	GCNGC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	207, 442
PsuI	RGATCY	2 cut(s)	13, 411
PvuII	CAGCTG	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	3 cut(s)	13, 225, 411
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	79, 141, 168, 285, 387, 421, 450
SfaNI	GCATC	1 cut(s)	361
Sse9I	AATT	2 cut(s)	45, 258
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	181, 444
TaaI	ACNGT	1 cut(s)	403
TasI	AATT	2 cut(s)	45, 258
TfiI	GAWTC	2 cut(s)	309, 330
TseFI	GTSAC	2 cut(s)	142, 397
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	2 cut(s)	142, 397
TspDTI	ATGAA	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.