AT2G36430

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002063
Physical Location & Seq
Forward (+)
15289975 .. 15291763
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36430.1

Sequence Viewer

Length: 1347 bp
ATGGTGGATGCGGCGGAGCAACCACCTTCTACCTCCGAGGGAGAAAGCCTCCTCAAGATCCACATTGAGAGGATGCATAAGAAGCTGAAGGAACCACCACGGTTGCTCAGTTCGGCCGCCGGGAAACCTACTTGCTCCATCTTCCGGGTACCTCAGAGCATGATTGATTGTAATGGAAGATGCTATGAGCCACGAGTGGTCTCGATTGGACCGTACCACCGTGGCCAAACACAACTCAAAATGATTGAAGAACACAAATGGCGTTACCTAAACGTTCTGCTCACTAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAACGTTGAGGAAGTGGCGAGAGAATGTTACTCCGAGACAATCCACATGGACTCGGAAGAGTTCAACGAGATGATGGTTCTTGACGGTTGCTTTCTCCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTTCGAACCAAACGATCCACTTGTGGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTTTCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTAGAAACTTTGTTCAATCTCACAAGAGGAGACAACGAAAACGAGACAAACGCTTCTTTACAATCTCTAGCGTTTGCGTTTTTCAACAACATGATGCACAGAACAGAGGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCCAAACACCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTGAGCTTCACACGCCGCCGGCAACGAATCCAGGGAAGGAAAAGATGCCGTCCCACATTATCCACAGCATTTCGAAGCTCCGGCGAGCCGGGATCAAACTCCGAGAGCTGAAAGACGCAGAGAGCTTCTTAGTGGTGAGATTCAGACACGGGACCATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCTTAGAGAACTGCGTGGCATACGAGCAATGCCACGTGGCGTGCTCAATGCATTTCACGACATACGCGACGCTCCTAGATTGTCTGACGAATACTTACAAGGACGTTGAGTATCTATGCGACCAAAACATCATAGAAAACTATTTCGGAACAGATACAGAGCTGGCGAAATTCGTGAACAGTTTAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAGTGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACTTTAACTCTCCTTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCGTTATCCAGACTATTTACACTGTTTTCCAGGCTTATCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

448

Amino Acids

52.02

Weight (kDa)

5.46

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 47 - 433 8.5e-128 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 495
AccI GTMKAC 1 cut(s) 921
AccII CGCG 1 cut(s) 1007
AciI CCGC 4 cut(s) 11, 14, 117, 758
AclI AACGTT 2 cut(s) 273, 333
AclWI GGATC 3 cut(s) 52, 470, 842
AcoI YGGCCR 3 cut(s) 114, 223, 486
AcsI RAATTY 2 cut(s) 1109, 1232
AcuI CTGAAG 1 cut(s) 107
AcvI CACGTG 2 cut(s) 976, 1213
AfaI GTAC 2 cut(s) 150, 215
AfiI CCNNNNNNNGG 2 cut(s) 144, 495
AgsI TTSAA 7 cut(s) 248, 394, 574, 643, 685, 1178, 1231
AjnI CCWGG 3 cut(s) 677, 772, 1329
AluBI AGCT 8 cut(s) 85, 433, 691, 748, 820, 850, 867, 1102
AluI AGCT 8 cut(s) 85, 433, 691, 748, 820, 850, 867, 1102
Alw21I GWGCWC 1 cut(s) 986
Alw26I GTCTC 5 cut(s) 205, 359, 582, 596, 1270
AlwI GGATC 3 cut(s) 52, 470, 842
AoxI GGCC 3 cut(s) 114, 223, 486
ApeKI GCWGC 1 cut(s) 1277
ApoI RAATTY 2 cut(s) 1109, 1232
Asp718I GGTACC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 209, 894
AsuC2I CCSGG 4 cut(s) 121, 146, 737, 832
AsuHPI GGTGA 2 cut(s) 889, 907
AsuII TTCGAA 2 cut(s) 465, 815
AvaII GGWCC 2 cut(s) 209, 894
BalI TGGCCA 2 cut(s) 225, 488
BanI GGYRCC 1 cut(s) 148
BauI CACGAG 1 cut(s) 192
BbrPI CACGTG 2 cut(s) 976, 1213
Bbv12I GWGCWC 1 cut(s) 986
BbvI GCAGC 1 cut(s) 1264
BccI CCATC 3 cut(s) 146, 397, 905
BceAI ACGGC 1 cut(s) 775
BciT130I CCWGG 3 cut(s) 679, 774, 1331
BcnI CCSGG 4 cut(s) 121, 146, 737, 832
BcoDI GTCTC 5 cut(s) 205, 359, 582, 596, 1270
BfaI CTAG 5 cut(s) 285, 305, 560, 626, 1016
BfmI CTRYAG 1 cut(s) 514
BglII AGATCT 1 cut(s) 670
BisI GCNGC 4 cut(s) 12, 117, 758, 1278
BlsI GCNGC 4 cut(s) 13, 118, 759, 1279
Bme1390I CCNGG 7 cut(s) 121, 146, 679, 737, 774, 832, 1331
Bme18I GGWCC 2 cut(s) 209, 894
BmgT120I GGNCC 2 cut(s) 209, 894
BmiI GGNNCC 3 cut(s) 93, 150, 895
BmrFI CCNGG 7 cut(s) 121, 146, 679, 737, 774, 832, 1331
BmsI GCATC 5 cut(s) 63, 170, 642, 777, 894
BplI GAGNNNNNCTC 4 cut(s) 33, 65, 510, 542
Bpu14I TTCGAA 2 cut(s) 465, 815
BpuEI CTTGAG 3 cut(s) 38, 449, 554
BpuMI CCSGG 4 cut(s) 121, 146, 737, 832
BsaAI YACGTR 2 cut(s) 976, 1213
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 6 cut(s) 36, 98, 220, 489, 773, 1253
BsaWI WCCGGW 1 cut(s) 720
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 495
Bse118I RCCGGY 2 cut(s) 760, 907
Bse3DI GCAATG 1 cut(s) 974
BseBI CCWGG 3 cut(s) 679, 774, 1331
BseDI CCNNGG 6 cut(s) 36, 98, 220, 489, 773, 1253
BseGI GGATG 3 cut(s) 13, 78, 732
BseLI CCNNNNNNNGG 2 cut(s) 144, 495
BseMI GCAATG 1 cut(s) 974
BseMII CTCAG 2 cut(s) 121, 167
BseRI GAGGAG 4 cut(s) 41, 600, 698, 707
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 1264
Bsh1236I CGCG 1 cut(s) 1007
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 116, 225, 488
BshNI GGYRCC 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 986
BsiSI CCGG 8 cut(s) 120, 145, 721, 737, 761, 823, 831, 908
BslFI GGGAC 2 cut(s) 778, 907
BslI CCNNNNNNNGG 2 cut(s) 144, 495
BsmAI GTCTC 5 cut(s) 205, 359, 582, 596, 1270
BsmFI GGGAC 2 cut(s) 778, 907
BsnI GGCC 3 cut(s) 116, 225, 488
Bso31I GGTCTC 1 cut(s) 205
Bsp119I TTCGAA 2 cut(s) 465, 815
Bsp1286I GDGCHC 1 cut(s) 986
Bsp143I GATC 5 cut(s) 57, 475, 670, 834, 912
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 4 cut(s) 11, 14, 117, 758
BspANI GGCC 3 cut(s) 116, 225, 488
BspCNI CTCAG 2 cut(s) 120, 166
BspFNI CGCG 1 cut(s) 1007
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 93, 150, 895
BspPI GGATC 3 cut(s) 52, 470, 842
BspQI GCTCTTC 1 cut(s) 314
BspT104I TTCGAA 2 cut(s) 465, 815
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 974
BsrFI RCCGGY 2 cut(s) 760, 907
BssAI RCCGGY 2 cut(s) 760, 907
BssECI CCNNGG 6 cut(s) 36, 98, 220, 489, 773, 1253
BssMI GATC 5 cut(s) 57, 475, 670, 834, 912
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 489, 1253
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 679, 774, 1331
Bst4CI ACNGT 8 cut(s) 102, 213, 221, 416, 919, 1121, 1155, 1324
Bst6I CTCTTC 2 cut(s) 314, 381
BstBAI YACGTR 2 cut(s) 976, 1213
BstBI TTCGAA 2 cut(s) 465, 815
BstC8I GCNNGC 5 cut(s) 762, 828, 909, 982, 1104
BstDEI CTNAG 5 cut(s) 107, 153, 692, 871, 943
BstDSI CCRYGG 3 cut(s) 98, 220, 489
BstF5I GGATG 3 cut(s) 13, 78, 732
BstFNI CGCG 1 cut(s) 1007
BstKTI GATC 5 cut(s) 60, 478, 673, 837, 915
BstMAI GTCTC 5 cut(s) 205, 359, 582, 596, 1270
BstMBI GATC 5 cut(s) 57, 475, 670, 834, 912
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 82, 754, 1277
BstNI CCWGG 3 cut(s) 679, 774, 1331
BstSCI CCNGG 7 cut(s) 119, 144, 677, 735, 772, 830, 1329
BstSFI CTRYAG 1 cut(s) 514
BstUI CGCG 1 cut(s) 1007
BstV1I GCAGC 1 cut(s) 1264
BstX2I RGATCY 2 cut(s) 57, 670
BstYI RGATCY 2 cut(s) 57, 670
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 116, 225, 488
BtgI CCRYGG 3 cut(s) 98, 220, 489
BtsCI GGATG 3 cut(s) 13, 78, 732
BtsIMutI CAGTG 2 cut(s) 1160, 1320
Cac8I GCNNGC 5 cut(s) 762, 828, 909, 982, 1104
CciI TCATGA 1 cut(s) 930
Cfr10I RCCGGY 2 cut(s) 760, 907
Cfr13I GGNCC 2 cut(s) 209, 894
CseI GACGC 2 cut(s) 866, 1018
Csp6I GTAC 2 cut(s) 149, 214
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 6 cut(s) 160, 316, 376, 490, 649, 931
CviQI GTAC 2 cut(s) 149, 214
DdeI CTNAG 5 cut(s) 107, 153, 692, 871, 943
DpnI GATC 5 cut(s) 59, 477, 672, 836, 914
DpnII GATC 5 cut(s) 57, 475, 670, 834, 912
EaeI YGGCCR 3 cut(s) 114, 223, 486
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 314, 381
EarI CTCTTC 2 cut(s) 314, 381
EciI GGCGGA 1 cut(s) 29
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 489, 1253
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 209, 894
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 107
Eco72I CACGTG 2 cut(s) 976, 1213
EcoRII CCWGG 3 cut(s) 677, 772, 1329
EcoT14I CCWWGG 2 cut(s) 489, 1253
EcoT22I ATGCAT 2 cut(s) 78, 993
ErhI CCWWGG 2 cut(s) 489, 1253
FaeI CATG 6 cut(s) 163, 319, 379, 493, 652, 934
FaqI GGGAC 2 cut(s) 778, 907
FatI CATG 6 cut(s) 159, 315, 375, 489, 648, 930
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 4 cut(s) 12, 117, 758, 1278
FokI GGATG 3 cut(s) 20, 85, 719
Fsp4HI GCNGC 4 cut(s) 12, 117, 758, 1278
FspBI CTAG 5 cut(s) 285, 305, 560, 626, 1016
GluI GCNGC 4 cut(s) 12, 117, 758, 1278
HaeIII GGCC 3 cut(s) 116, 225, 488
HapII CCGG 8 cut(s) 120, 145, 721, 737, 761, 823, 831, 908
HgaI GACGC 2 cut(s) 866, 1018
Hin1II CATG 6 cut(s) 163, 319, 379, 493, 652, 934
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 4 cut(s) 380, 538, 769, 882
HpaII CCGG 8 cut(s) 120, 145, 721, 737, 761, 823, 831, 908
HphI GGTGA 2 cut(s) 889, 907
Hpy166II GTNNAC 3 cut(s) 448, 922, 1117
Hpy188I TCNGA 8 cut(s) 37, 156, 364, 385, 845, 887, 1026, 1088
Hpy8I GTNNAC 3 cut(s) 448, 922, 1117
Hpy99I CGWCG 3 cut(s) 923, 926, 1012
HpyAV CCTTC 3 cut(s) 36, 82, 772
HpyCH4III ACNGT 8 cut(s) 102, 213, 221, 416, 919, 1121, 1155, 1324
HpyCH4IV ACGT 5 cut(s) 273, 333, 975, 1044, 1212
HpyCH4V TGCA 3 cut(s) 76, 655, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 754, 1277
HpyF3I CTNAG 5 cut(s) 107, 153, 692, 871, 943
HpySE526I ACGT 5 cut(s) 273, 333, 975, 1044, 1212
Hsp92II CATG 6 cut(s) 163, 319, 379, 493, 652, 934
KpnI GGTACC 1 cut(s) 152
KroI GCCGGC 2 cut(s) 760, 907
KroNI GCCGGC 2 cut(s) 762, 909
Kzo9I GATC 5 cut(s) 57, 475, 670, 834, 912
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 4 cut(s) 16, 140, 825, 1017
Lsp1109I GCAGC 1 cut(s) 1264
LweI GCATC 5 cut(s) 63, 170, 642, 777, 894
MaeI CTAG 5 cut(s) 285, 305, 560, 626, 1016
MaeII ACGT 5 cut(s) 273, 333, 975, 1044, 1212
MaeIII GTNAC 2 cut(s) 263, 356
MalI GATC 5 cut(s) 59, 477, 672, 836, 914
MboI GATC 5 cut(s) 57, 475, 670, 834, 912
MflI RGATCY 2 cut(s) 57, 670
MhlI GDGCHC 1 cut(s) 986
MlsI TGGCCA 2 cut(s) 225, 488
MluCI AATT 2 cut(s) 1109, 1232
MluNI TGGCCA 2 cut(s) 225, 488
MlyI GAGTC 1 cut(s) 374
Mox20I TGGCCA 2 cut(s) 225, 488
Mph1103I ATGCAT 2 cut(s) 78, 993
MroNI GCCGGC 2 cut(s) 760, 907
MscI TGGCCA 2 cut(s) 225, 488
MseI TTAA 1 cut(s) 1245
MslI CAYNNNNRTG 1 cut(s) 902
Msp20I TGGCCA 2 cut(s) 225, 488
MspI CCGG 8 cut(s) 120, 145, 721, 737, 761, 823, 831, 908
MspR9I CCNGG 7 cut(s) 121, 146, 679, 737, 774, 832, 1331
MvaI CCWGG 3 cut(s) 679, 774, 1331
MvnI CGCG 1 cut(s) 1007
MwoI GCNNNNNNNGC 3 cut(s) 82, 754, 1277
NaeI GCCGGC 2 cut(s) 762, 909
NciI CCSGG 4 cut(s) 121, 146, 737, 832
NcoI CCATGG 1 cut(s) 489
NdeII GATC 5 cut(s) 57, 475, 670, 834, 912
NgoMIV GCCGGC 2 cut(s) 760, 907
NlaIII CATG 6 cut(s) 163, 319, 379, 493, 652, 934
NlaIV GGNNCC 3 cut(s) 93, 150, 895
NsiI ATGCAT 2 cut(s) 78, 993
NspV TTCGAA 2 cut(s) 465, 815
PagI TCATGA 1 cut(s) 930
PciSI GCTCTTC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 4 cut(s) 209, 471, 897, 1004
PdiI GCCGGC 2 cut(s) 762, 909
PfeI GAWTC 3 cut(s) 538, 769, 882
PflMI CCANNNNNTGG 1 cut(s) 495
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 4 cut(s) 13, 118, 759, 1279
PleI GAGTC 1 cut(s) 374
PmaCI CACGTG 2 cut(s) 976, 1213
PmlI CACGTG 2 cut(s) 976, 1213
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 2 cut(s) 976, 1213
Psp1406I AACGTT 2 cut(s) 273, 333
Psp6I CCWGG 3 cut(s) 677, 772, 1329
PspCI CACGTG 2 cut(s) 976, 1213
PspGI CCWGG 3 cut(s) 677, 772, 1329
PspN4I GGNNCC 3 cut(s) 93, 150, 895
PspPI GGNCC 2 cut(s) 209, 894
PsuI RGATCY 2 cut(s) 57, 670
RsaI GTAC 2 cut(s) 150, 215
RsaNI GTAC 2 cut(s) 149, 214
RseI CAYNNNNRTG 1 cut(s) 902
SalI GTCGAC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 1245
SatI GCNGC 4 cut(s) 12, 117, 758, 1278
Sau3AI GATC 5 cut(s) 57, 475, 670, 834, 912
Sau96I GGNCC 2 cut(s) 209, 894
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 7 cut(s) 121, 146, 679, 737, 774, 832, 1331
SduI GDGCHC 1 cut(s) 986
SfaNI GCATC 5 cut(s) 63, 170, 642, 777, 894
SfcI CTRYAG 1 cut(s) 514
SfuI TTCGAA 2 cut(s) 465, 815
SgrDI CGTCGACG 1 cut(s) 920
SinI GGWCC 2 cut(s) 209, 894
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 3 cut(s) 53, 428, 533
SmoI CTYRAG 3 cut(s) 53, 428, 533
Sse9I AATT 2 cut(s) 1109, 1232
SsiI CCGC 4 cut(s) 11, 14, 117, 758
SspMI CTAG 5 cut(s) 285, 305, 560, 626, 1016
StyD4I CCNGG 7 cut(s) 119, 144, 677, 735, 772, 830, 1329
StyI CCWWGG 2 cut(s) 489, 1253
TaaI ACNGT 8 cut(s) 102, 213, 221, 416, 919, 1121, 1155, 1324
TaiI ACGT 5 cut(s) 276, 336, 978, 1047, 1215
TaqI TCGA 7 cut(s) 203, 465, 711, 815, 900, 921, 1143
TasI AATT 2 cut(s) 1109, 1232
TauI GCSGC 3 cut(s) 14, 119, 760
TfiI GAWTC 3 cut(s) 538, 769, 882
Tru1I TTAA 1 cut(s) 1245
Tru9I TTAA 1 cut(s) 1245
TscAI CASTG 2 cut(s) 1160, 1327
TseI GCWGC 1 cut(s) 1277
TspDTI ATGAA 3 cut(s) 332, 721, 919
TspGWI ACGGA 1 cut(s) 1291
TspRI CASTG 2 cut(s) 1160, 1327
Van91I CCANNNNNTGG 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 209, 894
XapI RAATTY 2 cut(s) 1109, 1232
XbaI TCTAGA 2 cut(s) 304, 559
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 5 cut(s) 285, 305, 560, 626, 1016
Zsp2I ATGCAT 2 cut(s) 78, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.